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MIKK_79-2_draft_assembly

Organism name:
Oryzias latipes (Japanese medaka)
BioSample:
SAMEA8062573
BioProject:
PRJEB43089
Submitter:
EMBL-EBI
Date:
2021/03/21
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_905309435.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CAJNPA01
Genome coverage:
20x

IDs: 9642521 [UID] 25805128 [GenBank]

See Genome Information for Oryzias latipes

There are 20 assemblies for this organism

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History (Show revision history)

Comment

Draft assembly of MIKK panel line 79-2. Assembled from Nanopore DNAreads wtdbg2 and polished with Illumina reads using Pilon

Global statistics

Total sequence length730,361,544
Total ungapped length730,361,544
Number of contigs3,053
Contig N50742,721
Contig L50278
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3,053

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced730,361,5443,053730,361,544742,72100
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