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mAcoKem2_REL_1905

Organism name:
Acomys kempi (Kemp's spiny mouse)
BioSample:
SAMEA8478152
BioProject:
PRJEB44012
Submitter:
WELLCOME TRUST SANGER INSTITUTE
Date:
2021/07/06
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_907164505.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Genome coverage:
85x

IDs: 10453051 [UID] 27758268 [GenBank]

See Genome Information for Acomys kempi

History (Show revision history)

Comment

Global statistics

Total sequence length2,162,154,686
Total ungapped length2,123,074,979
Gaps between scaffolds0
Number of scaffolds19
Scaffold N50125,230,826
Scaffold L508
Number of contigs109,600
Contig N5033,625
Contig L5019,128
Total number of chromosomes and plasmids19
Number of component sequences (WGS or clone)19

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_907164504.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1OU015355.1n/an/a
Chromosome 2OU015356.1n/an/a
Chromosome 3OU015357.1n/an/a
Chromosome 4OU015358.1n/an/a
Chromosome 5OU015359.1n/an/a
Chromosome 6OU015360.1n/an/a
Chromosome 7OU015361.1n/an/a
Chromosome 8OU015362.1n/an/a
Chromosome 9OU015363.1n/an/a
Chromosome 10OU015364.1n/an/a
Chromosome 11OU015365.1n/an/a
Chromosome 12OU015366.1n/an/a
Chromosome 13OU015367.1n/an/a
Chromosome 14OU015368.1n/an/a
Chromosome 15OU015369.1n/an/a
Chromosome 16OU015370.1n/an/a
Chromosome 17OU015371.1n/an/a
Chromosome 18OU015372.1n/an/a
Chromosome XOU015373.1n/an/a

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,162,154,686192,123,074,979125,230,826109,5810
Chromosome 1203,594,2131200,878,314203,594,2139,9120
Chromosome 2159,639,9821157,499,858159,639,9827,4830
Chromosome 3147,991,3671145,925,913147,991,3677,2030
Chromosome 4143,580,4291140,942,680143,580,4297,2020
Chromosome 5129,624,8831126,957,313129,624,8836,7530
Chromosome 6142,885,5751140,397,014142,885,5757,1710
Chromosome 7129,637,9471127,349,225129,637,9476,5860
Chromosome 8125,230,8261123,154,444125,230,8266,3570
Chromosome 9117,854,1621115,757,902117,854,1625,8180
Chromosome 10124,391,8641122,152,733124,391,8646,1590
Chromosome 11123,677,5211121,351,621123,677,5216,3460
Chromosome 12108,465,0351106,508,653108,465,0355,7240
Chromosome 1386,063,037183,516,26086,063,0375,2010
Chromosome 1499,561,253197,424,78699,561,2535,3980
Chromosome 1579,860,018178,190,91479,860,0184,1670
Chromosome 1678,196,808176,413,37578,196,8084,0320
Chromosome 1738,169,830137,822,32038,169,8301,9910
Chromosome 189,247,16518,303,4459,247,1657240
Chromosome X114,482,7711112,528,209114,482,7715,3540