U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ilProPyga1.1

Organism name:
Protodeltote pygarga (moths)
BioSample:
SAMEA7631560
BioProject:
PRJEB52081
Submitter:
WELLCOME SANGER INSTITUTE
Date:
2022/05/03
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_936450705.1 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Genome coverage:
92x
Linked assembly:
GCA_936440985.1 (alternate pseudohaplotype of diploid)

IDs: 12880731 [UID] 33636948 [GenBank]

See Genome Information for Protodeltote pygarga

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

The assembly ilProPyga1.1 is based on 92x PacBio data, 10X Genomics Chromium data, and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation ... with Hifiasm, retained haplotig separation with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHiFi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.  more

Global statistics

Total sequence length421,684,553
Total ungapped length421,682,353
Gaps between scaffolds0
Number of scaffolds32
Scaffold N5014,964,455
Scaffold L5013
Number of contigs43
Contig N5014,151,730
Contig L5013
Total number of chromosomes and plasmids32
Number of component sequences (WGS or clone)32

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_936450704.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1OW388249.1n/an/a
Chromosome 2OW388250.1n/an/a
Chromosome 3OW388251.1n/an/a
Chromosome 4OW388252.1n/an/a
Chromosome 5OW388253.1n/an/a
Chromosome 6OW388254.1n/an/a
Chromosome 7OW388255.1n/an/a
Chromosome 8OW388256.1n/an/a
Chromosome 9OW388257.1n/an/a
Chromosome 10OW388258.1n/an/a
Chromosome 11OW388259.1n/an/a
Chromosome 12OW388260.1n/an/a
Chromosome 13OW388261.1n/an/a
Chromosome 14OW388262.1n/an/a
Chromosome 15OW388263.1n/an/a
Chromosome 16OW388264.1n/an/a
Chromosome 17OW388265.1n/an/a
Chromosome 18OW388266.1n/an/a
Chromosome 19OW388267.1n/an/a
Chromosome 20OW388268.1n/an/a
Chromosome 21OW388269.1n/an/a
Chromosome 22OW388270.1n/an/a
Chromosome 23OW388271.1n/an/a
Chromosome 24OW388272.1n/an/a
Chromosome 25OW388273.1n/an/a
Chromosome 26OW388274.1n/an/a
Chromosome 27OW388275.1n/an/a
Chromosome 28OW388276.1n/an/a
Chromosome 29OW388277.1n/an/a
Chromosome 30OW388278.1n/an/a
Chromosome ZOW388248.1n/an/a

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All421,669,06931421,666,86914,964,455110
Chromosome 117,686,418117,686,41817,686,41800
Chromosome 217,097,960117,097,96017,097,96000
Chromosome 316,884,165116,883,96516,884,16510
Chromosome 416,843,500116,843,30016,843,50010
Chromosome 516,797,490116,797,49016,797,49000
Chromosome 616,111,565116,111,56516,111,56500
Chromosome 716,109,370116,109,17016,109,37010
Chromosome 815,950,780115,950,78015,950,78000
Chromosome 915,736,667115,736,66715,736,66700
Chromosome 1015,704,772115,704,57215,704,77210
Chromosome 1115,542,403115,542,40315,542,40300
Chromosome 1214,964,455114,964,45514,964,45500
Chromosome 1314,756,893114,756,89314,756,89300
Chromosome 1414,669,569114,669,56914,669,56900
Chromosome 1514,180,420114,180,22014,180,42010
Chromosome 1614,151,730114,151,73014,151,73000
Chromosome 1713,754,845113,754,64513,754,84510
Chromosome 1813,665,000113,665,00013,665,00000
Chromosome 1913,142,013113,142,01313,142,01300
Chromosome 2012,483,250112,483,25012,483,25000
Chromosome 2112,431,419112,431,41912,431,41900
Chromosome 2211,255,030111,255,03011,255,03000
Chromosome 2311,098,919111,098,91911,098,91900
Chromosome 2410,383,079110,383,07910,383,07900
Chromosome 2510,257,989110,257,78910,257,98910
Chromosome 269,323,24519,322,8459,323,24520
Chromosome 277,961,99417,961,9947,961,99400
Chromosome 287,013,58717,013,1877,013,58720
Chromosome 296,968,91316,968,9136,968,91300
Chromosome 306,933,53216,933,5326,933,53200
Chromosome Z21,808,097121,808,09721,808,09700
MoleculeTotal
Length
Mitochondrion MT15,484