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Release 5

  • Record removed. This version of the assembly has been suppressed.
Organism name:
Drosophila melanogaster (fruit fly)
BioSample:
SAMN02803731
BioProject:
PRJNA13812
Submitter:
The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera Genomics
Date:
2007/10/22
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000001215.1 (suppressed)
RefSeq assembly accession:
GCF_000001215.1 (suppressed), see latest assembly
RefSeq assembly and GenBank assembly identical:
yes

IDs: 3218 [UID] 5318 [GenBank] 3218 [RefSeq]

See Genome Information for Drosophila melanogaster

There are 61 assemblies for this organism

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History (Show revision history)

Comment

This is Release 5 of the Drosophila melanogaster genome, produced jointly by the Berkeley Drosophila Genome Project, Celera Genomics, and the Drosophila Heterochromatin Genome Project. The gene annotation is based on Release 5.57 (FB2014_03) provided by FlyBase. Additional information ... about this assembly and annotation can be found at http://www.fruitfly.org and http://flybase.org.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::FlyBase
Annotation Status::Full annotation
Annotation Version::Release 5.57
URL::http://flybase.org
##Genome-Annotation-Data-END##

Global statistics

Total sequence length139,485,381
Total ungapped length136,826,056
Gaps between scaffolds0
Number of scaffolds2,479
Scaffold N5023,011,544
Scaffold L503
Number of contigs3,058
Contig N5021,485,538
Contig L503
Total number of chromosomes and plasmids8
Number of component sequences (WGS or clone)2,502

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000001625.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XAE014298.4=NC_004354.31
Chromosome 2LAE014134.5=NT_033779.41
Chromosome 2RAE013599.4=NT_033778.31
Chromosome 3LAE014296.4=NT_037436.31
Chromosome 3RAE014297.2=NT_033777.21
Chromosome 4AE014135.3=NC_004353.30
Chromosome Yn/an/an/a1
Mitochondrion MTU37541.1=NC_001709.10
UnFA000001.1=NS_000188.10
unplacedn/an/an/a2,466

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule139,485,3812,479136,826,05623,011,5445790
Chromosome XAllAssembled moleculeUnlocalized scaffolds22,626,93922,422,827204,11221122,536,83922,332,727204,11222,422,82722,422,827204,112330000
Chromosome 2LAllAssembled moleculeUnlocalized scaffolds23,380,41623,011,544368,87221123,309,21623,011,344297,87223,011,54423,011,544368,872422000
Chromosome 2RAllAssembled moleculeUnlocalized scaffolds24,435,46921,146,7083,288,76121123,868,54921,146,6082,721,94121,146,70821,146,7083,288,76126125000
Chromosome 3LAllAssembled moleculeUnlocalized scaffolds27,099,04824,543,5572,555,49121126,959,76524,543,4572,416,30824,543,55724,543,5572,555,49120119000
Chromosome 3RAllAssembled moleculeUnlocalized scaffolds30,422,56027,905,0532,517,50721130,169,35927,905,0532,264,30627,905,05327,905,0532,517,50714014000
Chromosome 4Assembled molecule1,351,85711,351,7571,351,85710
Chromosome YAllAssembled moleculeUnlocalized scaffolds347,0380347,038101242,8060242,806347,0380347,03856056000
Mitochondrion MTAssembled molecule19,517119,51719,51700
unplacedAssembled molecule9,802,5372,4668,368,24812,8274550
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