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Release 6

Release 6 plus MT

Description:
Release 6 plus composite mitochondrial genome
Organism name:
Drosophila melanogaster (fruit fly)
BioSample:
SAMN02803731
BioProject:
PRJNA13812
Submitter:
The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera Genomics
Date:
2014/07/25
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000001215.3 (replaced)
RefSeq assembly accession:
GCF_000001215.3 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version

IDs: 202921 [UID] 1186768 [GenBank] 1186788 [RefSeq]

See Genome Information for Drosophila melanogaster

There are 61 assemblies for this organism

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History (Show revision history)

Comment

This is Release 6 of the Drosophila melanogaster genome, produced jointly by the Berkeley Drosophila Genome Project, Celera Genomics, and the Drosophila Heterochromatin Genome Project. The gene annotation is based on Release 6.32 provided by FlyBase. Additional information about ... this assembly and annotation can be found at http://www.fruitfly.org and http://flybase.org.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::FlyBase
Annotation Status::Full annotation
Annotation Version::Release 6.32
URL::http://flybase.org
##Genome-Annotation-Data-END##

Global statistics

Total sequence length143,725,995
Total ungapped length142,573,017
Gaps between scaffolds0
Number of scaffolds1,870
Scaffold N5025,286,936
Scaffold L503
Number of contigs2,442
Contig N5021,485,538
Contig L503
Total number of chromosomes and plasmids8
Number of component sequences (WGS or clone)1,870

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000001625.3)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XAE014298.5=NC_004354.4446
Chromosome 2LAE014134.6=NT_033779.50
Chromosome 2RAE013599.5=NT_033778.40
Chromosome 3LAE014296.5=NT_037436.40
Chromosome 3RAE014297.3=NT_033777.30
Chromosome 4AE014135.4=NC_004353.40
Chromosome YCP007106.1=NC_024512.1199
unplacedn/an/an/a1,217

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule143,706,4781,869142,553,50025,286,9365720
Chromosome XAllAssembled moleculeUnlocalized scaffolds24,547,61623,542,2711,005,345447144624,408,58123,476,151932,43023,542,27123,542,2712,307361026000
Chromosome 2LAssembled molecule23,513,712123,513,51223,513,71220
Chromosome 2RAssembled molecule25,286,936125,280,23625,286,93680
Chromosome 3LAssembled molecule28,110,227127,992,06728,110,22790
Chromosome 3RAssembled molecule32,079,331132,054,75932,079,331270
Chromosome 4Assembled molecule1,348,13111,331,1311,348,13110
Chromosome YAllAssembled moleculeUnlocalized scaffolds4,527,5753,667,352860,22320011994,204,4613,409,719794,7423,667,3523,667,35225,80527421163000
unplacedAssembled molecule4,292,9501,2173,768,7536,0412150
MoleculeTotal
Length
Mitochondrion MT19,517
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