NCBI34

This assembly has been replaced. See current version

Description:: UCSC representation of NCBI34 (hg16) with the DR51 alternate MHC haplotype as an unlocalized scaffold on chromosome 6
Organism name:: Homo sapiens (human)
BioProject:: PRJNA31257
Submitter:: International Human Genome Sequencing Consortium
Date:: 2004/02/04
Synonyms:: hg16
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: n/a
RefSeq assembly accession:: GCF_000001405.10 (replaced)
RefSeq assembly and GenBank assembly identical:: n/a

IDs: 111478 [UID] 111478 [RefSeq]

See Genome Information for Homo sapiens

There are 1094 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000001405.29	≠	GCF_000001405.40	GRCh38.p14	Chromosome	Latest GenBank, Latest RefSeq
GCA_000001405.28	≠	GCF_000001405.39	GRCh38.p13	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.27	≠	GCF_000001405.38	GRCh38.p12	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.26	=	GCF_000001405.37	GRCh38.p11	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.25	=	GCF_000001405.36	GRCh38.p10	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.24	=	GCF_000001405.35	GRCh38.p9	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.23	=	GCF_000001405.34	GRCh38.p8	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.22	=	GCF_000001405.33	GRCh38.p7	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.21	=	GCF_000001405.32	GRCh38.p6	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.20	=	GCF_000001405.31	GRCh38.p5	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.19	=	GCF_000001405.30	GRCh38.p4	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.18	=	GCF_000001405.29	GRCh38.p3	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.17	=	GCF_000001405.28	GRCh38.p2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.16	=	GCF_000001405.27	GRCh38.p1	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.15	=	GCF_000001405.26	GRCh38	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.14	=	GCF_000001405.25	GRCh37.p13	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.13	=	GCF_000001405.24	GRCh37.p12	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.12	=	GCF_000001405.23	GRCh37.p11	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.11	=	GCF_000001405.22	GRCh37.p10	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.10	=	GCF_000001405.21	GRCh37.p9	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.9	n/a	n/a	GRCh37.p8	Chromosome	Replaced GenBank
GCA_000001405.8	n/a	n/a	GRCh37.p7	Chromosome	Replaced GenBank
GCA_000001405.7	n/a	n/a	GRCh37.p6	Chromosome	Replaced GenBank
GCA_000001405.6	=	GCF_000001405.17	GRCh37.p5	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.5	n/a	n/a	GRCh37.p4	Chromosome	Replaced GenBank
GCA_000001405.4	n/a	n/a	GRCh37.p3	Chromosome	Replaced GenBank
GCA_000001405.3	=	GCF_000001405.14	GRCh37.p2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.2	n/a	n/a	GRCh37.p1	Chromosome	Replaced GenBank
GCA_000001405.1	=	GCF_000001405.13	GRCh37	Chromosome	Replaced GenBank, Replaced RefSeq
n/a	n/a	GCF_000001405.12	NCBI36	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.11	NCBI35	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.10	NCBI34	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.9	NCBI34	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.8	NCBI33	Chromosome	Replaced RefSeq

Comment

Global statistics

Total sequence length	3,091,959,510
Total ungapped length	2,865,086,288
Gaps between scaffolds	408
Number of scaffolds	490
Scaffold N50	29,104,798
Scaffold L50	29
Number of contigs	1,756
Contig N50	28,857,747
Contig L50	30
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	26,751

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	3,091,959,510	490	2,865,086,288	29,104,798	1,305	408
Chromosome 1	AllAssembled moleculeUnlocalized scaffolds	251,393,929246,127,9415,265,988	916526	226,796,383221,562,9415,233,442	11,954,58412,454,193201,427	3340334	79790
Chromosome 2	AllAssembled moleculeUnlocalized scaffolds	244,420,789243,615,958804,831	30237	238,345,438237,541,607803,831	68,373,97868,373,978176,839	13310	23230
Chromosome 3	AllAssembled moleculeUnlocalized scaffolds	199,943,306199,344,050599,256	954	195,073,037194,473,781599,256	100,530,261100,530,261146,010	220	770
Chromosome 4	AllAssembled moleculeUnlocalized scaffolds	192,129,983191,731,959398,024	23176	187,238,652186,841,959396,693	23,437,59023,437,590130,654	15015	17170
Chromosome 5	AllAssembled moleculeUnlocalized scaffolds	181,178,609181,034,922143,687	13121	177,696,509177,552,822143,687	21,842,05821,842,058143,687	000	13130
Chromosome 6	AllAssembled moleculeUnlocalized scaffolds	172,870,327170,914,5761,955,751	1293	169,208,022167,256,5761,951,446	48,884,76748,884,7671,298,215	43043	11110
Chromosome 7	AllAssembled moleculeUnlocalized scaffolds	159,028,155158,545,518482,637	16124	155,156,955154,676,518480,437	47,493,54047,493,540153,959	22022	12120
Chromosome 8	AllAssembled moleculeUnlocalized scaffolds	147,258,200146,308,819949,381	261412	143,289,849142,347,919941,930	37,749,23637,749,236183,161	80080	13130
Chromosome 9	AllAssembled moleculeUnlocalized scaffolds	138,538,386136,372,0452,166,341	604713	117,775,778115,624,0452,151,733	34,730,79534,730,795180,582	1480148	56560
Chromosome 10	AllAssembled moleculeUnlocalized scaffolds	135,880,990135,037,215843,775	28235	132,013,962131,173,215840,747	30,112,61330,112,613239,523	31031	25250
Chromosome 11	Assembled molecule	134,482,954	9	130,908,854	38,489,089	1	9
Chromosome 12	Assembled molecule	132,078,379	9	129,826,279	32,815,934	1	10
Chromosome 13	AllAssembled moleculeUnlocalized scaffolds	113,232,578113,042,980189,598	651	95,749,17895,559,980189,198	67,740,32567,740,325189,598	404	880
Chromosome 14	Assembled molecule	105,311,216	1	87,191,216	87,191,216	0	3
Chromosome 15	AllAssembled moleculeUnlocalized scaffolds	100,989,482100,256,656732,826	20119	81,982,07181,259,656722,415	53,619,96553,619,965119,514	74074	12120
Chromosome 16	Assembled molecule	90,041,932	13	79,932,432	19,977,173	0	14
Chromosome 17	AllAssembled moleculeUnlocalized scaffolds	83,559,48881,860,2661,699,222	301218	79,351,05877,677,7441,673,314	17,922,18317,922,183147,354	2530253	13130
Chromosome 18	AllAssembled moleculeUnlocalized scaffolds	76,119,40176,115,1394,262	651	74,658,30374,654,0414,262	20,074,19920,074,1994,262	110	440
Chromosome 19	AllAssembled moleculeUnlocalized scaffolds	63,904,34063,811,65192,689	541	55,878,34055,785,65192,689	31,383,02931,383,02992,689	000	770
Chromosome 20	Assembled molecule	63,741,868	7	59,424,990	24,982,290	0	8
Chromosome 21	Assembled molecule	46,976,097	5	33,924,307	28,602,116	5	6
Chromosome 22	Assembled molecule	49,396,972	11	34,352,072	23,178,213	0	14
Chromosome X	AllAssembled moleculeUnlocalized scaffolds	156,595,949153,692,3912,903,558	332211	152,070,887149,215,3912,855,496	19,073,42719,073,427832,153	2020202	30300
Chromosome Y	Assembled molecule	50,286,555	11	24,649,555	6,323,261	0	14
unplaced	Assembled molecule	2,599,625	16	2,592,161	182,896	76	0

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NCBI34

See Genome Information for Homo sapiens

There are 1094 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	n/a	n/a	NC_000001.7	26
Chromosome 2	n/a	n/a	n/a	7
Chromosome 3	n/a	n/a	NC_000003.8	4
Chromosome 4	n/a	n/a	NC_000004.8	6
Chromosome 5	n/a	n/a	NC_000005.7	1
Chromosome 6	n/a	n/a	NC_000006.8	3
Chromosome 7	n/a	n/a	NC_000007.10	4
Chromosome 8	n/a	n/a	NC_000008.8	12
Chromosome 9	n/a	n/a	n/a	13
Chromosome 10	n/a	n/a	NC_000010.7	5
Chromosome 11	n/a	n/a	NC_000011.7	0
Chromosome 12	n/a	n/a	NC_000012.8	0
Chromosome 13	n/a	n/a	NC_000013.8	1
Chromosome 14	n/a	n/a	NC_000014.6	0
Chromosome 15	n/a	n/a	NC_000015.7	9
Chromosome 16	n/a	n/a	NC_000016.7	0
Chromosome 17	n/a	n/a	NC_000017.8	18
Chromosome 18	n/a	n/a	NC_000018.7	1
Chromosome 19	n/a	n/a	NC_000019.8	1
Chromosome 20	n/a	n/a	NC_000020.8	0
Chromosome 21	n/a	n/a	NC_000021.6	0
Chromosome 22	n/a	n/a	NC_000022.7	0
Chromosome X	n/a	n/a	NC_000023.7	11
Chromosome Y	n/a	n/a	NC_000024.6	0
unplaced	n/a	n/a	n/a	16