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NCBI35

Organism name:
Homo sapiens (human)
BioProject:
PRJNA31257
Submitter:
International Human Genome Sequencing Consortium
Date:
2004/08/24
Synonyms:
hg17
Assembly type:
haploid-with-alt-loci
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
n/a
RefSeq assembly accession:
GCF_000001405.11 (replaced)
RefSeq assembly and GenBank assembly identical:
n/a

IDs: 2908 [UID] 2908 [RefSeq]

See Genome Information for Homo sapiens

There are 1041 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Status::Full annotation
Annotation Version::Homo sapiens Annotation Release 105
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::5.1
Annotation Method::Best-placed RefSeq; Gnomon
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics*

Number of regions with alternate loci or patches4
Total sequence length3,091,360,260
Total ungapped length2,865,812,574
Gaps between scaffolds344
Number of scaffolds377
Scaffold N5038,509,590
Scaffold L5025
Number of contigs1,215
Contig N5037,760,040
Contig L5026
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)26,866

*Note: Statistics shown for the primary assembly-unit. See the statistics report for additional statistics.

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PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
DR52
DR53

Regions

NameLocation
PAR#1X:1-2692881
PAR#2X:154494748-154824264
PAR#1Y:1-2692881
PAR#2Y:57372175-57701691
Assembly Unit: Primary Assembly (GCF_000001305.11)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1n/an/aNC_000001.814
Chromosome 2n/an/aNC_000002.92
Chromosome 3n/an/aNC_000003.95
Chromosome 4n/an/aNC_000004.96
Chromosome 5n/an/aNC_000005.81
Chromosome 6n/an/aNC_000006.92
Chromosome 7n/an/aNC_000007.114
Chromosome 8n/an/aNC_000008.98
Chromosome 9n/an/aNC_000009.98
Chromosome 10n/an/aNC_000010.81
Chromosome 11n/an/aNC_000011.80
Chromosome 12n/an/aNC_000012.91
Chromosome 13n/an/aNC_000013.91
Chromosome 14n/an/aNC_000014.70
Chromosome 15n/an/aNC_000015.85
Chromosome 16n/an/aNC_000016.81
Chromosome 17n/an/aNC_000017.917
Chromosome 18n/an/aNC_000018.81
Chromosome 19n/an/aNC_000019.82
Chromosome 20n/an/aNC_000020.90
Chromosome 21n/an/aNC_000021.70
Chromosome 22n/an/aNC_000022.82
Chromosome Xn/an/aNC_000023.85
Chromosome Yn/an/aNC_000024.70

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule3,091,360,2603772,865,812,57438,509,590856344
Chromosome 1AllAssembled moleculeUnlocalized scaffolds248,769,978245,522,8473,247,131513714226,051,438222,827,8473,223,59156,331,64656,331,6461,637,740244024451510
Chromosome 2AllAssembled moleculeUnlocalized scaffolds243,386,387243,018,229368,15823212237,871,236237,503,378367,85868,373,98068,373,980185,57163321210
Chromosome 3AllAssembled moleculeUnlocalized scaffolds200,276,456199,505,740770,7161055195,406,456194,635,740770,716100,530,261100,530,261146,010000770
Chromosome 4AllAssembled moleculeUnlocalized scaffolds192,191,500191,411,218780,28221156187,941,500187,161,218780,28223,438,00923,438,009161,14700015150
Chromosome 5AllAssembled moleculeUnlocalized scaffolds181,001,553180,857,866143,687761177,846,453177,702,766143,68741,199,37141,199,371143,687000770
Chromosome 6AllAssembled moleculeUnlocalized scaffolds172,801,261170,975,6991,825,5621192169,140,461167,317,6991,822,76248,945,89048,945,8901,305,2302802811110
Chromosome 7AllAssembled moleculeUnlocalized scaffolds159,257,103158,628,139628,96416124155,386,203154,759,139627,06447,497,09747,497,097179,3051901912120
Chromosome 8AllAssembled moleculeUnlocalized scaffolds146,868,636146,274,826593,81018108143,203,485142,612,826590,65938,454,50238,454,502183,16159158990
Chromosome 9AllAssembled moleculeUnlocalized scaffolds139,391,933138,429,268962,66550428118,737,574117,781,268956,30639,435,72639,435,726173,4436106154540
Chromosome 10AllAssembled moleculeUnlocalized scaffolds135,526,903135,413,628113,27520191131,724,681131,613,628111,05330,112,61330,112,613113,2752302321210
Chromosome 11Assembled molecule134,452,3848131,130,75338,509,59018
Chromosome 12AllAssembled moleculeUnlocalized scaffolds132,916,629132,449,811466,818981130,723,229130,259,311463,91832,815,93432,815,934466,81832329990
Chromosome 13AllAssembled moleculeUnlocalized scaffolds114,329,838114,142,980186,85865195,746,83895,559,980186,85867,740,32567,740,325186,858000880
Chromosome 14Assembled molecule106,368,585188,290,58588,290,58503
Chromosome 15AllAssembled moleculeUnlocalized scaffolds100,923,261100,338,915584,3461611581,920,10381,341,915578,18853,619,96553,619,965139,2605005012120
Chromosome 16AllAssembled moleculeUnlocalized scaffolds88,932,73988,827,254105,48565178,990,18978,884,754105,43542,003,58242,003,582105,485101660
Chromosome 17AllAssembled moleculeUnlocalized scaffolds80,592,75278,774,7421,818,01027101779,608,67877,800,2201,808,45821,163,83321,163,833147,354169016910100
Chromosome 18AllAssembled moleculeUnlocalized scaffolds76,121,41576,117,1534,26265174,660,41774,656,1554,26220,074,19920,074,1994,262000440
Chromosome 19AllAssembled moleculeUnlocalized scaffolds64,063,50963,811,651251,85864256,037,50955,785,651251,85831,383,02931,383,029159,169000770
Chromosome 20Assembled molecule62,435,964659,505,25326,144,33306
Chromosome 21Assembled molecule46,944,323434,171,43828,617,42965
Chromosome 22AllAssembled moleculeUnlocalized scaffolds49,762,02849,554,710207,3181210234,972,12834,764,810207,31823,276,30223,276,302166,56600013130
Chromosome XAllAssembled moleculeUnlocalized scaffolds156,343,432154,824,2641,519,16826215151,874,276150,394,2641,480,01227,718,69227,718,6921,005,289157015727270
Chromosome YAssembled molecule57,701,6911724,871,6916,265,435018
Region
Name
LocationScaffold
Count
Total
Length
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unit NameScaffold
Count
Total
Length
Ungapped
Length
Scaffold
N50
Spanned
Gaps
DR521139,182139,182139,1820
DR531150,447150,447150,4470
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