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GRCh37.p2

Description:
Genome Reference Consortium Human Build 37 patch release 2 (GRCh37.p2)
Organism name:
Homo sapiens (human)
BioProject:
PRJNA31257
Submitter:
Genome Reference Consortium
Date:
2010/08/05
Synonyms:
hg19
Assembly type:
haploid-with-alt-loci
Release type:
patch
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000001405.3 (replaced)
RefSeq assembly accession:
GCF_000001405.14 (replaced)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 167788 [UID] 167118 [GenBank] 167788 [RefSeq]

See Genome Information for Homo sapiens

There are 1094 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Status::Full annotation
Annotation Version::Homo sapiens Annotation Release 105
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::5.1
Annotation Method::Best-placed RefSeq; Gnomon
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics*

Number of regions with alternate loci or patches75
Total sequence length3,101,788,170
Total ungapped length2,867,437,753
Gaps between scaffolds271
Number of scaffolds249
Scaffold N5046,395,641
Scaffold L5021
Number of contigs350
Contig N5038,508,932
Contig L5024
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)27,054

*Note: Statistics shown for the primary assembly-unit. See the statistics report for additional statistics.

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
PATCHES
ALT_REF_LOCI_1
ALT_REF_LOCI_2
ALT_REF_LOCI_3
ALT_REF_LOCI_4
ALT_REF_LOCI_5
ALT_REF_LOCI_6
ALT_REF_LOCI_7
ALT_REF_LOCI_8
ALT_REF_LOCI_9
non-nuclear

Regions

NameLocation
REGION21:153673007-153838214
MTX11:155180173-155275036
REGION31:198339213-198694304
REGION11:248865779-249098883
REGION42:36453102-36590458
SPC252:169686873-169793704
VPRBP3:51416109-51584055
DNAH123:57369478-57399969
SLC25A263:66270271-66308065
REGION53:151307154-151477286
REGION64:34519577-34885480
LPHN34:62777687-62877254
UGT2B174:69170077-69878175
REGION74:156756530-156908416
REGION95:12681538-12744122
SMA5:68505250-70910270
MCTP15:94505561-94590195
REGION85:161800673-161968654
MHC6:28477797-33448354
REGION106:80059725-80156628
REGION117:141333209-141446583
EPPK1_SPATC18:144743526-145146062
SCXB8:145285645-145659901
REGION149:7428994-7577169
REGION139:72028659-72092013
MAMDC29:72639029-72804234
REGION159:90793962-90842895
ABO9:136049442-136369192
REGION129:139136890-139252828
FAM23A_MRC110:17613209-18252930
REGION1610:27574584-27706537
REGION1810:45670681-45964419
REGION1710:133258319-133381404
REGION1911:25191953-25340626
REGION2112:28148967-28263711
REGION2212:58326520-58486538
REGION2312:59323046-59454651
REGION2412:101503370-101652073
REGION2012:126711744-126890020
GALNT912:132806993-132967794
REGION2515:28557187-28842093
MEGF1115:66200521-66577156
REGION2616:55822434-56002460
SNTB216:69174054-69258593
RPH3AL17:1-252428
FAM101B17:252429-296626
REGION2717:21250948-21566608
MYO1917:34442621-35005379
SOCS717:36372617-36711255
REGION2917:39463362-39589187
MAPT17:43384864-44913631
PECAM117:62273514-62649312
REGION2817:68302419-68520360
REGION3017:75216812-75295408
REGION3118:47818564-48101162
REGION3218:49189306-49348012
REGION3318:65090960-65219788
REGION3418:70600357-70692016
REGION3518:76253467-76412030
REGION3618:76694886-76848997
ZNF6619:20845947-21225187
REGION3719:21831092-21991838
REGION3919:22303652-22483468
REGION3819:34643165-34791855
REGION4020:17751747-17874115
REGION4121:15796462-15847792
REGION4221:23474793-23669288
REGION4321:34141390-34210247
TMEM50B21:34777735-34884866
APOBEC22:39280299-39407165
CYP2D622:42477964-42648568
PAR#1X:60001-2699520
PAR#2X:154931044-155260560
PAR#1Y:10001-2649520
PAR#2Y:59034050-59363566
Assembly Unit: Primary Assembly (GCF_000001305.13)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000663.1=NC_000001.102
Chromosome 2CM000664.1=NC_000002.110
Chromosome 3CM000665.1=NC_000003.110
Chromosome 4CM000666.1=NC_000004.112
Chromosome 5CM000667.1=NC_000005.90
Chromosome 6CM000668.1=NC_000006.110
Chromosome 7CM000669.1=NC_000007.131
Chromosome 8CM000670.1=NC_000008.102
Chromosome 9CM000671.1=NC_000009.114
Chromosome 10CM000672.1=NC_000010.100
Chromosome 11CM000673.1=NC_000011.91
Chromosome 12CM000674.1=NC_000012.110
Chromosome 13CM000675.1=NC_000013.100
Chromosome 14CM000676.1=NC_000014.80
Chromosome 15CM000677.1=NC_000015.90
Chromosome 16CM000678.1=NC_000016.90
Chromosome 17CM000679.1=NC_000017.104
Chromosome 18CM000680.1=NC_000018.91
Chromosome 19CM000681.1=NC_000019.92
Chromosome 20CM000682.1=NC_000020.100
Chromosome 21CM000683.1=NC_000021.81
Chromosome 22CM000684.1=NC_000022.100
Chromosome XCM000685.1=NC_000023.100
Chromosome YCM000686.1=NC_000024.90
unplacedn/an/an/a39

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule3,101,788,1702492,867,437,75346,395,641101271
Chromosome 1AllAssembled moleculeUnlocalized scaffolds249,904,550249,250,621653,92921192225,934,550225,280,621653,92957,411,34957,411,349547,4961919022220
Chromosome 2Assembled molecule243,199,37313238,204,52268,452,323615
Chromosome 3Assembled molecule198,022,4304194,797,140100,537,10707
Chromosome 4AllAssembled moleculeUnlocalized scaffolds191,535,534191,154,276381,25812102188,042,934187,661,676381,258115,591,997115,591,997191,46911012120
Chromosome 5Assembled molecule180,915,2605177,695,26046,395,64116
Chromosome 6Assembled molecule171,115,0673167,395,06758,720,16668
Chromosome 7AllAssembled moleculeUnlocalized scaffolds159,321,559159,138,663182,896871155,536,559155,353,663182,89650,360,63150,360,631182,896990880
Chromosome 8AllAssembled moleculeUnlocalized scaffolds146,440,111146,364,02276,089972142,964,911142,888,92275,98938,440,85238,440,85238,914211990
Chromosome 9AllAssembled moleculeUnlocalized scaffolds141,696,573141,213,431483,14228244120,626,573120,143,431483,14262,237,59262,237,592169,8741515029290
Chromosome 10Assembled molecule135,534,7478131,314,74779,420,533812
Chromosome 11AllAssembled moleculeUnlocalized scaffolds135,046,619135,006,51640,103541131,169,619131,129,51640,10341,593,37941,593,37940,10344011110
Chromosome 12Assembled molecule133,851,8956130,481,39571,516,77648
Chromosome 13Assembled molecule115,169,878595,589,87867,740,324010
Chromosome 14Assembled molecule107,349,540188,289,54088,289,54005
Chromosome 15Assembled molecule102,531,392781,694,76953,620,202210
Chromosome 16Assembled molecule90,354,753478,884,75342,003,582110
Chromosome 17AllAssembled moleculeUnlocalized scaffolds81,529,60781,195,210334,397106478,129,60777,795,210334,39744,983,20144,983,201174,588220550
Chromosome 18AllAssembled moleculeUnlocalized scaffolds78,081,51078,077,2484,26243174,661,51074,657,2484,26225,808,11225,808,1124,262220770
Chromosome 19AllAssembled moleculeUnlocalized scaffolds59,380,84159,128,983251,85864256,060,84155,808,983251,85831,387,20131,387,201159,169110880
Chromosome 20Assembled molecule63,025,520459,505,52031,409,46129
Chromosome 21AllAssembled moleculeUnlocalized scaffolds48,157,57748,129,89527,68298135,134,22435,106,64227,58228,617,43028,617,43027,68298114140
Chromosome 22Assembled molecule51,304,566434,894,56629,755,34609
Chromosome XAssembled molecule155,270,56017151,100,56027,775,034521
Chromosome YAssembled molecule59,373,5661725,653,5666,265,435216
unplacedAssembled molecule3,675,142393,675,142164,23900
MoleculeTotal
Length
Mitochondrion MT16,569
Region
Name
LocationScaffold
Count
Total
Length
Ungapped
Length
Scaffold
N50
Spanned
Gaps
REGION21:153673007-1538382141182,439182,439182,4390
MTX11:155180173-1552750361110,268110,268110,2680
REGION31:198339213-1986943041366,579366,579366,5790
REGION11:248865779-249098883298,66898,66849,3520
REGION42:36453102-365904581143,390143,390143,3900
SPC252:169686873-1697937041123,821123,821123,8210
VPRBP3:51416109-515840551171,362171,362171,3620
DNAH123:57369478-57399969178,79378,79378,7930
SLC25A263:66270271-66308065165,06365,06365,0630
REGION53:151307154-1514772861180,671180,671180,6710
REGION64:34519577-348854801376,187376,187376,1870
LPHN34:62777687-628772541121,345121,345121,3450
UGT2B174:69170077-698781751590,426590,426590,4260
REGION74:156756530-1569084161164,536164,536164,5360
REGION95:12681538-12744122182,72882,72882,7280
SMA5:68505250-7091027011,620,3241,520,3241,620,3241
MCTP15:94505561-945901951101,241101,241101,2410
REGION85:161800673-1619686541173,459173,459173,4590
MHC6:28477797-33448354733,085,26927,684,9484,683,26398
REGION106:80059725-801566281124,736124,736124,7360
REGION117:141333209-1414465831119,383119,383119,3830
EPPK1_SPATC18:144743526-1451460621429,806429,806429,8060
SCXB8:145285645-1456599011203,777203,777203,7770
REGION149:7428994-75771691162,988162,988162,9880
REGION139:72028659-72092013171,55171,55171,5510
MAMDC29:72639029-728042341171,286171,286171,2860
REGION159:90793962-90842895160,03260,03260,0320
ABO9:136049442-1363691921330,164330,164330,1640
REGION129:139136890-1392528282111,716111,71662,4350
FAM23A_MRC110:17613209-182529301392,792392,792392,7920
REGION1610:27574584-277065371179,254179,254179,2540
REGION1810:45670681-459644191309,802309,802309,8020
REGION1710:133258319-1333814041128,378128,378128,3780
REGION1911:25191953-253406261154,407154,407154,4070
REGION2112:28148967-282637111120,804120,804120,8040
REGION2212:58326520-584865381169,178169,178169,1780
REGION2312:59323046-594546511138,655138,655138,6550
REGION2412:101503370-1016520731154,881154,881154,8810
REGION2012:126711744-1268900201184,319184,319184,3190
GALNT912:132806993-1329677941165,247165,247165,2470
REGION2515:28557187-288420931296,527296,527296,5270
MEGF1115:66200521-665771561388,773388,773388,7730
REGION2616:55822434-560024601192,462192,462192,4620
SNTB216:69174054-69258593189,67289,67289,6720
RPH3AL17:1-2524281270,261270,261270,2610
FAM101B17:252429-296626145,55145,55145,5510
REGION2717:21250948-215666081406,963406,963406,9630
MYO1917:34442621-350053791534,288534,288534,2880
SOCS717:36372617-367112551338,640338,640338,6400
REGION2917:39463362-395891871133,151133,151133,1510
MAPT17:43384864-4491363111,680,8281,580,8281,680,8282
PECAM117:62273514-626493121457,041457,041457,0410
REGION2817:68302419-685203601223,995223,995223,9950
REGION3017:75216812-75295408190,21990,21990,2190
REGION3118:47818564-481011621289,831289,831289,8310
REGION3218:49189306-493480121164,789164,789164,7890
REGION3318:65090960-652197881198,278148,278198,2781
REGION3418:70600357-706920161104,552104,552104,5520
REGION3518:76253467-764120301167,950167,950167,9500
REGION3618:76694886-768489971159,547159,547159,5470
ZNF6619:20845947-212251871385,657385,657385,6570
REGION3719:21831092-219918381170,227170,227170,2270
REGION3919:22303652-224834681188,024188,024188,0240
REGION3819:34643165-347918551155,864155,864155,8640
REGION4020:17751747-178741151128,385128,385128,3850
REGION4121:15796462-15847792163,91763,91763,9170
REGION4221:23474793-236692881201,198201,198201,1980
REGION4321:34141390-34210247174,65274,65274,6520
TMEM50B21:34777735-348848661116,690116,690116,6900
APOBEC22:39280299-39407165196,92496,92496,9240
CYP2D622:42477964-426485681158,507158,507158,5070
Unit NameScaffold
Count
Total
Length
Ungapped
Length
Scaffold
N50
Spanned
Gaps
PATCHES7014,336,56514,186,565270,2612
ALT_REF_LOCI_114,622,2902,320,7474,622,29028
ALT_REF_LOCI_214,795,3714,795,3714,795,3710
ALT_REF_LOCI_314,610,3964,204,3024,610,39610
ALT_REF_LOCI_414,683,2634,100,7414,683,26316
ALT_REF_LOCI_514,833,3983,794,9114,833,39822
ALT_REF_LOCI_614,611,9844,295,3254,611,9845
ALT_REF_LOCI_714,928,5674,173,5514,928,56717
ALT_REF_LOCI_81590,426590,426590,4260
ALT_REF_LOCI_911,680,8281,580,8281,680,8282