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NCBI34

Description:
NCBI34 with the DR51 alternate MHC haplotype scaffold in an alt-locus assembly-unit
Organism name:
Homo sapiens (human)
BioProject:
PRJNA31257
Submitter:
NCBI
Date:
2004/02/04
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
n/a
RefSeq assembly accession:
GCF_000001405.9 (replaced)
RefSeq assembly and GenBank assembly identical:
n/a

IDs: 5238 [UID] 5238 [RefSeq]

See Genome Information for Homo sapiens

There are 1044 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,091,959,510
Total ungapped length2,865,086,288
Gaps between scaffolds408
Number of scaffolds490
Scaffold N5029,104,798
Scaffold L5029
Number of contigs1,756
Contig N5028,857,747
Contig L5030
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)26,751

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
DR51
Assembly Unit: Primary Assembly (GCF_000001305.9)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1n/an/aNC_000001.726
Chromosome 2n/an/an/a7
Chromosome 3n/an/aNC_000003.84
Chromosome 4n/an/aNC_000004.86
Chromosome 5n/an/aNC_000005.71
Chromosome 6n/an/aNC_000006.82
Chromosome 7n/an/aNC_000007.104
Chromosome 8n/an/aNC_000008.812
Chromosome 9n/an/an/a13
Chromosome 10n/an/aNC_000010.75
Chromosome 11n/an/aNC_000011.70
Chromosome 12n/an/aNC_000012.80
Chromosome 13n/an/aNC_000013.81
Chromosome 14n/an/aNC_000014.60
Chromosome 15n/an/aNC_000015.79
Chromosome 16n/an/aNC_000016.70
Chromosome 17n/an/aNC_000017.818
Chromosome 18n/an/aNC_000018.71
Chromosome 19n/an/aNC_000019.81
Chromosome 20n/an/aNC_000020.80
Chromosome 21n/an/aNC_000021.60
Chromosome 22n/an/aNC_000022.70
Chromosome Xn/an/aNC_000023.711
Chromosome Yn/an/aNC_000024.60
unplacedn/an/an/a16

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule3,091,822,1364892,864,948,91429,104,7981,305408
Chromosome 1AllAssembled moleculeUnlocalized scaffolds251,393,929246,127,9415,265,988916526226,796,383221,562,9415,233,44211,954,58412,454,193201,427334033479790
Chromosome 2AllAssembled moleculeUnlocalized scaffolds244,420,789243,615,958804,83130237238,345,438237,541,607803,83168,373,97868,373,978176,8391331023230
Chromosome 3AllAssembled moleculeUnlocalized scaffolds199,943,306199,344,050599,256954195,073,037194,473,781599,256100,530,261100,530,261146,010220770
Chromosome 4AllAssembled moleculeUnlocalized scaffolds192,129,983191,731,959398,02423176187,238,652186,841,959396,69323,437,59023,437,590130,6541501517170
Chromosome 5AllAssembled moleculeUnlocalized scaffolds181,178,609181,034,922143,68713121177,696,509177,552,822143,68721,842,05821,842,058143,68700013130
Chromosome 6AllAssembled moleculeUnlocalized scaffolds172,732,953170,914,5761,818,3771192169,070,648167,256,5761,814,07248,884,76748,884,7671,298,2154304311110
Chromosome 7AllAssembled moleculeUnlocalized scaffolds159,028,155158,545,518482,63716124155,156,955154,676,518480,43747,493,54047,493,540153,9592202212120
Chromosome 8AllAssembled moleculeUnlocalized scaffolds147,258,200146,308,819949,381261412143,289,849142,347,919941,93037,749,23637,749,236183,1618008013130
Chromosome 9AllAssembled moleculeUnlocalized scaffolds138,538,386136,372,0452,166,341604713117,775,778115,624,0452,151,73334,730,79534,730,795180,582148014856560
Chromosome 10AllAssembled moleculeUnlocalized scaffolds135,880,990135,037,215843,77528235132,013,962131,173,215840,74730,112,61330,112,613239,5233103125250
Chromosome 11Assembled molecule134,482,9549130,908,85438,489,08919
Chromosome 12Assembled molecule132,078,3799129,826,27932,815,934110
Chromosome 13AllAssembled moleculeUnlocalized scaffolds113,232,578113,042,980189,59865195,749,17895,559,980189,19867,740,32567,740,325189,598404880
Chromosome 14Assembled molecule105,311,216187,191,21687,191,21603
Chromosome 15AllAssembled moleculeUnlocalized scaffolds100,989,482100,256,656732,8262011981,982,07181,259,656722,41553,619,96553,619,965119,5147407412120
Chromosome 16Assembled molecule90,041,9321379,932,43219,977,173014
Chromosome 17AllAssembled moleculeUnlocalized scaffolds83,559,48881,860,2661,699,22230121879,351,05877,677,7441,673,31417,922,18317,922,183147,354253025313130
Chromosome 18AllAssembled moleculeUnlocalized scaffolds76,119,40176,115,1394,26265174,658,30374,654,0414,26220,074,19920,074,1994,262110440
Chromosome 19AllAssembled moleculeUnlocalized scaffolds63,904,34063,811,65192,68954155,878,34055,785,65192,68931,383,02931,383,02992,689000770
Chromosome 20Assembled molecule63,741,868759,424,99024,982,29008
Chromosome 21Assembled molecule46,976,097533,924,30728,602,11656
Chromosome 22Assembled molecule49,396,9721134,352,07223,178,213014
Chromosome XAllAssembled moleculeUnlocalized scaffolds156,595,949153,692,3912,903,558332211152,070,887149,215,3912,855,49619,073,42719,073,427832,153202020230300
Chromosome YAssembled molecule50,286,5551124,649,5556,323,261014
unplacedAssembled molecule2,599,625162,592,161182,896760
Unit NameScaffold
Count
Total
Length
Ungapped
Length
Scaffold
N50
Spanned
Gaps
DR511137,374137,374137,3740
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