Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

MGSCv3

This assembly has been replaced. See current version

Organism name:

Mus musculus (house mouse)

Infraspecific name:

Strain: C57BL/6J

BioSample:

SAMEA3138312

BioProject:

PRJNA20689

Submitter:

Genome Reference Consortium

Date:

2002/05/15

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

genome length too small

GenBank assembly accession:

n/a

RefSeq assembly accession:

GCF_000001635.12 (replaced)

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

CAAA01

IDs: 2598 [UID] 2598 [RefSeq]

See Genome Information for Mus musculus

There are 65 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000001635.9	=	GCF_000001635.27	GRCm39	Chromosome	Latest GenBank, Latest RefSeq
GCA_000001635.8	=	GCF_000001635.26	GRCm38.p6	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001635.7	=	GCF_000001635.25	GRCm38.p5	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001635.6	=	GCF_000001635.24	GRCm38.p4	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001635.5	=	GCF_000001635.23	GRCm38.p3	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001635.4	=	GCF_000001635.22	GRCm38.p2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001635.3	=	GCF_000001635.21	GRCm38.p1	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001635.2	=	GCF_000001635.20	GRCm38	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001635.1	=	GCF_000001635.18	MGSCv37	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001635.1	≠	GCF_000001635.16	MGSCv37	Chromosome	Replaced GenBank, Replaced RefSeq
n/a	n/a	GCF_000001635.15	MGSCv36	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001635.14	MGSCv35	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001635.13	MGSCv34	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001635.12	MGSCv3	Chromosome	Replaced RefSeq

Comment

Global statistics

Total sequence length	2,684,542,854
Total ungapped length	2,475,067,725
Gaps between scaffolds	366
Number of scaffolds	42,620
Scaffold N50	17,794,526
Scaffold L50	41
Number of contigs	219,140
Contig N50	25,412
Contig L50	28,249
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	219,560

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	n/a	n/a	AC_000113.1	0
Chromosome 2	n/a	n/a	AC_000114.1	0
Chromosome 3	n/a	n/a	AC_000115.1	0
Chromosome 4	n/a	n/a	AC_000116.1	0
Chromosome 5	n/a	n/a	AC_000117.1	0
Chromosome 6	n/a	n/a	AC_000118.1	0
Chromosome 7	n/a	n/a	AC_000119.1	0
Chromosome 8	n/a	n/a	AC_000120.1	0
Chromosome 9	n/a	n/a	AC_000121.1	0
Chromosome 10	n/a	n/a	AC_000122.1	0
Chromosome 11	n/a	n/a	AC_000123.1	0
Chromosome 12	n/a	n/a	AC_000124.1	0
Chromosome 13	n/a	n/a	AC_000125.1	0
Chromosome 14	n/a	n/a	AC_000126.1	0
Chromosome 15	n/a	n/a	AC_000127.1	0
Chromosome 16	n/a	n/a	AC_000128.1	0
Chromosome 17	n/a	n/a	AC_000129.1	0
Chromosome 18	n/a	n/a	AC_000130.1	0
Chromosome 19	n/a	n/a	AC_000131.1	0
Chromosome X	n/a	n/a	AC_000132.1	0
unplaced	n/a	n/a	n/a	42,254

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	2,684,542,854	42,620	2,475,067,725	17,794,526	176,520	366
Chromosome 1	196,842,934	23	183,092,030	21,618,853	12,919	23
Chromosome 2	180,335,396	10	169,091,196	41,610,409	11,870	10
Chromosome 3	160,564,582	22	148,726,544	13,818,816	10,507	22
Chromosome 4	151,730,910	19	140,582,273	18,786,867	10,636	19
Chromosome 5	151,006,098	27	137,322,409	11,307,089	10,959	27
Chromosome 6	150,316,567	25	138,089,959	15,639,621	9,870	25
Chromosome 7	135,793,178	62	121,883,536	21,612,240	9,375	62
Chromosome 8	129,321,983	13	118,554,674	16,801,126	9,058	13
Chromosome 9	125,583,845	13	115,929,702	13,254,964	8,360	13
Chromosome 10	131,187,037	13	121,030,015	16,168,183	9,450	13
Chromosome 11	122,883,361	6	114,719,650	33,619,803	8,030	6
Chromosome 12	114,251,360	27	105,318,253	15,539,509	7,481	27
Chromosome 13	117,115,093	20	106,932,811	10,280,735	7,697	20
Chromosome 14	116,006,794	14	107,493,588	26,643,475	7,557	14
Chromosome 15	104,633,288	5	96,527,070	65,562,851	6,836	5
Chromosome 16	99,184,200	4	91,016,862	62,540,926	6,643	4
Chromosome 17	94,132,929	23	84,930,090	12,609,765	6,435	23
Chromosome 18	91,189,200	5	84,255,464	73,751,450	6,097	5
Chromosome 19	61,356,199	10	54,728,400	21,740,025	3,934	10
Chromosome X	147,161,770	25	133,892,634	14,840,928	9,050	25
unplaced	103,946,130	42,254	100,950,565	4,905	3,756	0

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

MGSCv3

See Genome Information for Mus musculus

There are 65 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics