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Source database (GenBank or RefSeq) File type

TAIR10

This assembly has been replaced. See current version

Organism name:

Arabidopsis thaliana (thale cress)

Infraspecific name:

Ecotype: Columbia

BioSample:

SAMN03081427

BioProject:

PRJNA10719

Submitter:

The Arabidopsis Information Resource (TAIR)

Date:

2011/05/11

Synonyms:

TAIR9

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_000001735.1 (replaced)

RefSeq assembly accession:

GCF_000001735.3 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

IDs: 237408 [UID] 286338 [GenBank] 237408 [RefSeq]

See Genome Information for Arabidopsis thaliana

Pathogen Detection Resources

There are 252 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000001735.2	=	GCF_000001735.4	TAIR10.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_000001735.1	≠	GCF_000001735.3	TAIR10	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001735.1	=	GCF_000001735.2	TAIR9	Chromosome	Replaced GenBank, Replaced RefSeq
n/a	n/a	GCF_000001735.1	TAIR8	Complete Genome	Replaced RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::TAIR and Araport
Annotation Status::Full annotation
Annotation Pipeline::Eukaryotic Annotation Propagation Pipeline
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	119,667,750
Total ungapped length	119,482,106
Gaps between scaffolds	0
Number of scaffolds	7
Scaffold N50	23,459,830
Scaffold L50	3
Number of contigs	102
Contig N50	11,194,537
Contig L50	5
Total number of chromosomes and plasmids	7
Number of component sequences (WGS or clone)	7

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	CP002684.1	=	NC_003070.9
Chromosome 2	CP002685.1	=	NC_003071.7
Chromosome 3	CP002686.1	=	NC_003074.8
Chromosome 4	CP002687.1	=	NC_003075.7
Chromosome 5	CP002688.1	=	NC_003076.8

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	Y08501.2	=	NC_001284.2
Chloroplast Pltd	AP000423.1	=	NC_000932.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	119,146,348	5	118,960,704	23,459,830	95
Chromosome 1	30,427,671	1	30,263,725	30,427,671	19
Chromosome 2	19,698,289	1	19,695,784	19,698,289	10
Chromosome 3	23,459,830	1	23,453,893	23,459,830	47
Chromosome 4	18,585,056	1	18,582,034	18,585,056	5
Chromosome 5	26,975,502	1	26,965,268	26,975,502	14

Molecule	Total Length
All	521,402
Mitochondrion MT	366,924
Chloroplast Pltd	154,478

Assembly

Genome Assembly

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TAIR10

See Genome Information for Arabidopsis thaliana

Pathogen Detection Resources

There are 252 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Global assembly definition

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Assembly Unit Name
Primary Assembly
non-nuclear