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Source database (GenBank or RefSeq) File type

Zv9

This assembly has been replaced. See current version

Organism name:

Danio rerio (zebrafish)

Infraspecific name:

Strain: Tuebingen

BioSample:

SAMEA3146315

BioProject:

PRJNA11776

Submitter:

Wellcome Trust Sanger Institute

Date:

2010/07/15

Synonyms:

danRer7

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_000002035.2 (replaced)

RefSeq assembly accession:

GCF_000002035.4 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

CABZ01

IDs: 238918 [UID] 169498 [GenBank] 238918 [RefSeq]

See Genome Information for Danio rerio

Pathogen Detection Resources

There are 18 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000002035.4	≠	GCF_000002035.6	GRCz11	Chromosome	Latest GenBank, Latest RefSeq
GCA_000002035.3	≠	GCF_000002035.5	GRCz10	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000002035.2	≠	GCF_000002035.4	Zv9	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000002035.1	≠	GCF_000002035.3	Zv8	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000002035.1	≠	GCF_000002035.2	Zv8	Chromosome	Replaced GenBank, Replaced RefSeq
n/a	n/a	GCF_000002035.1	Zv7	Chromosome	Replaced RefSeq

Comment

WGS31 is a novel whole genome shotgun assembly based on the datasets of 7.5x capillary shotgun reads and 30x Illumina reads. Contigs were first generated from the Illumina data of a double-haploid Tuebingen individual using Fuzzypath (Ning, Z., unpublished) ... and then combined with the capillary reads of another double-haploid Tuebingen individual, assembled with Phusion (PMID: 12529309).  more

Global statistics

Total sequence length	1,412,464,843
Total ungapped length	1,409,772,564
Gaps between scaffolds	3,427
Number of scaffolds	4,560
Scaffold N50	1,551,602
Scaffold L50	207
Number of contigs	28,064
Contig N50	1,073,451
Contig L50	285
Total number of chromosomes and plasmids	26
Number of component sequences (WGS or clone)	37,299

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CU651604.3	=	NC_007112.5	0
Chromosome 2	CU651605.3	=	NC_007113.5	0
Chromosome 3	CU651606.3	=	NC_007114.5	0
Chromosome 4	CU651607.3	=	NC_007115.5	0
Chromosome 5	CU651608.3	=	NC_007116.5	0
Chromosome 6	CU651609.3	=	NC_007117.5	0
Chromosome 7	CU651610.3	=	NC_007118.5	0
Chromosome 8	CU651611.3	=	NC_007119.5	0
Chromosome 9	CU651612.3	=	NC_007120.5	0
Chromosome 10	CU651613.3	=	NC_007121.5	0
Chromosome 11	CU651614.3	=	NC_007122.5	0
Chromosome 12	CU651615.3	=	NC_007123.5	0
Chromosome 13	CU651616.3	=	NC_007124.5	0
Chromosome 14	CU651617.3	=	NC_007125.5	0
Chromosome 15	CU651618.3	=	NC_007126.5	0
Chromosome 16	CU651619.3	=	NC_007127.5	0
Chromosome 17	CU651620.3	=	NC_007128.5	0
Chromosome 18	CU651621.3	=	NC_007129.5	0
Chromosome 19	CU651622.3	=	NC_007130.5	0
Chromosome 20	CU651623.3	=	NC_007131.5	0
Chromosome 21	CU651624.3	=	NC_007132.5	0
Chromosome 22	CU651625.3	=	NC_007133.5	0
Chromosome 23	CU651626.3	=	NC_007134.5	0
Chromosome 24	CU651627.3	=	NC_007135.5	0
Chromosome 25	CU651628.3	=	NC_007136.5	0
unplaced	n/a	n/a	n/a	1,107

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	1,412,448,247	4,559	1,409,755,968	1,551,602	23,504	3,427
Chromosome 1	60,348,388	135	60,258,188	1,817,818	768	134
Chromosome 2	60,300,536	170	60,186,736	1,500,420	969	169
Chromosome 3	63,268,876	107	63,180,576	2,624,598	777	106
Chromosome 4	62,094,675	98	62,038,675	1,384,557	463	97
Chromosome 5	75,682,077	196	75,554,601	1,335,302	1,082	195
Chromosome 6	59,938,731	125	59,820,931	2,050,917	1,054	124
Chromosome 7	77,276,063	214	77,155,963	1,561,979	988	213
Chromosome 8	56,184,765	120	56,101,565	1,637,775	713	119
Chromosome 9	58,232,459	144	58,128,559	4,542,568	896	143
Chromosome 10	46,591,166	103	46,527,966	1,736,677	530	102
Chromosome 11	46,661,319	152	46,566,419	1,785,173	798	151
Chromosome 12	50,697,278	203	50,560,678	1,237,402	1,164	202
Chromosome 13	54,093,808	128	54,015,383	2,131,944	658	127
Chromosome 14	53,733,891	117	53,645,891	2,310,742	764	116
Chromosome 15	47,442,429	162	47,337,429	1,378,886	889	161
Chromosome 16	58,780,683	178	58,657,483	1,045,303	1,055	177
Chromosome 17	53,984,731	141	53,889,231	1,406,597	815	140
Chromosome 18	49,877,488	122	49,765,688	1,100,034	997	121
Chromosome 19	50,254,551	125	50,166,151	2,467,856	760	124
Chromosome 20	55,952,140	137	55,860,340	2,239,026	782	136
Chromosome 21	44,544,065	112	44,459,565	1,787,924	734	111
Chromosome 22	42,261,000	98	42,187,869	1,246,611	636	97
Chromosome 23	46,386,876	107	46,298,476	3,471,747	778	106
Chromosome 24	43,947,580	132	43,861,157	1,572,786	735	131
Chromosome 25	38,499,472	126	38,412,572	1,046,845	744	125
unplaced	55,413,200	1,107	55,117,876	111,234	2,955	0

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Zv9

See Genome Information for Danio rerio

Pathogen Detection Resources

There are 18 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear