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Source database (GenBank or RefSeq) File type

GRCz10

This assembly has been replaced. See current version

Description:

Genome Reference Consortium Zebrafish Build 10

Organism name:

Danio rerio (zebrafish)

Infraspecific name:

Strain: Tuebingen

BioSample:

SAMN03020626

BioProject:

PRJNA11776

Submitter:

Genome Reference Consortium

Date:

2014/09/02

Synonyms:

danRer10

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_000002035.3 (replaced)

RefSeq assembly accession:

GCF_000002035.5 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

IDs: 210611 [UID] 1202508 [GenBank] 1205278 [RefSeq]

See Genome Information for Danio rerio

Pathogen Detection Resources

There are 18 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000002035.4	≠	GCF_000002035.6	GRCz11	Chromosome	Latest GenBank, Latest RefSeq
GCA_000002035.3	≠	GCF_000002035.5	GRCz10	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000002035.2	≠	GCF_000002035.4	Zv9	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000002035.1	≠	GCF_000002035.3	Zv8	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000002035.1	≠	GCF_000002035.2	Zv8	Chromosome	Replaced GenBank, Replaced RefSeq
n/a	n/a	GCF_000002035.1	Zv7	Chromosome	Replaced RefSeq

Comment

Assembly Name: GRCz10
The GRCz10 DNA sequence is composed of genomic sequence, primarily finished clones that were sequenced as part of Zebrafish Genome Project at the Wellcome Trust Sanger Institute. PCR products and WGS shotgun sequence from the WGS31 assembly ... (CABZ00000000.1) have been added where necessary to fill gaps. For more information see: http://genomereference.org.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Status::Full annotation
Annotation Version::Danio rerio Annotation Release 105
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::7.1
Annotation Method::Best-placed RefSeq; Gnomon
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,371,719,383
Total ungapped length	1,369,634,198
Gaps between scaffolds	2,338
Number of scaffolds	3,399
Scaffold N50	2,181,225
Scaffold L50	153
Number of contigs	22,852
Contig N50	1,258,148
Contig L50	252
Total number of chromosomes and plasmids	26
Number of component sequences (WGS or clone)	34,023

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM002885.1	=	NC_007112.6	0
Chromosome 2	CM002886.1	=	NC_007113.6	0
Chromosome 3	CM002887.1	=	NC_007114.6	0
Chromosome 4	CM002888.1	=	NC_007115.6	0
Chromosome 5	CM002889.1	=	NC_007116.6	0
Chromosome 6	CM002890.1	=	NC_007117.6	0
Chromosome 7	CM002891.1	=	NC_007118.6	0
Chromosome 8	CM002892.1	=	NC_007119.6	0
Chromosome 9	CM002893.1	=	NC_007120.6	0
Chromosome 10	CM002894.1	=	NC_007121.6	0
Chromosome 11	CM002895.1	=	NC_007122.6	0
Chromosome 12	CM002896.1	=	NC_007123.6	0
Chromosome 13	CM002897.1	=	NC_007124.6	0
Chromosome 14	CM002898.1	=	NC_007125.6	0
Chromosome 15	CM002899.1	=	NC_007126.6	0
Chromosome 16	CM002900.1	=	NC_007127.6	0
Chromosome 17	CM002901.1	=	NC_007128.6	0
Chromosome 18	CM002902.1	=	NC_007129.6	0
Chromosome 19	CM002903.1	=	NC_007130.6	0
Chromosome 20	CM002904.1	=	NC_007131.6	0
Chromosome 21	CM002905.1	=	NC_007132.6	0
Chromosome 22	CM002906.1	=	NC_007133.6	0
Chromosome 23	CM002907.1	=	NC_007134.6	0
Chromosome 24	CM002908.1	=	NC_007135.6	0
Chromosome 25	CM002909.1	=	NC_007136.6	0
unplaced	n/a	n/a	n/a	1,035

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	1,371,702,787	3,398	1,369,617,602	2,181,225	19,456	2,338
Chromosome 1	58,871,917	87	58,807,822	1,822,593	598	86
Chromosome 2	59,543,403	132	59,461,033	1,497,460	744	131
Chromosome 3	62,385,949	76	62,317,609	3,170,467	657	75
Chromosome 4	76,625,712	66	76,566,693	6,477,679	559	65
Chromosome 5	71,715,914	114	71,624,721	4,190,899	846	113
Chromosome 6	60,272,633	95	60,182,011	1,983,582	855	94
Chromosome 7	74,082,188	144	73,986,498	1,882,140	867	143
Chromosome 8	54,191,831	97	54,139,577	1,636,853	459	96
Chromosome 9	56,892,771	106	56,822,743	4,111,347	632	105
Chromosome 10	45,574,255	76	45,526,693	2,044,036	426	75
Chromosome 11	45,107,271	117	45,036,613	1,219,007	636	116
Chromosome 12	49,229,541	118	49,126,234	3,714,762	969	117
Chromosome 13	51,780,250	99	51,716,515	2,072,970	577	98
Chromosome 14	51,944,548	66	51,883,048	6,861,175	577	65
Chromosome 15	47,771,147	84	47,693,287	2,640,583	737	83
Chromosome 16	55,381,981	101	55,284,334	4,304,929	913	100
Chromosome 17	53,345,113	114	53,267,963	1,831,578	690	113
Chromosome 18	51,008,593	87	50,909,586	1,334,518	934	86
Chromosome 19	48,790,377	88	48,722,806	2,467,073	618	87
Chromosome 20	55,370,968	117	55,294,155	2,202,105	684	116
Chromosome 21	45,895,719	74	45,826,429	2,700,048	664	73
Chromosome 22	39,226,288	61	39,171,953	1,717,430	513	60
Chromosome 23	46,272,358	70	46,200,735	3,388,717	679	69
Chromosome 24	42,251,103	92	42,183,529	2,184,329	613	91
Chromosome 25	36,898,761	82	36,838,281	1,414,808	549	81
unplaced	31,272,196	1,035	31,026,734	49,566	2,460	0

Assembly

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GRCz10

See Genome Information for Danio rerio

Pathogen Detection Resources

There are 18 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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Assembly Unit Name
Primary Assembly
non-nuclear