U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Mmul_051212

Organism name:
Macaca mulatta (Rhesus monkey)
Isolate:
17573
Sex:
female
BioSample:
SAMN02981228
BioProject:
PRJNA12537
Submitter:
Macaca mulatta Genome Sequencing Consortium
Date:
2006/02/27
Release type:
Minor
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000002255.2 (latest)
RefSeq assembly accession:
GCF_000002255.3 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 19 unplaced scaffolds
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
AANU01

IDs: 227361 [UID] 1833778 [GenBank] 237568 [RefSeq]

See Genome Information for Macaca mulatta

Pathogen Detection Resources

There are 14 assemblies for this organism

See more

History (Show revision history)

Comment

The members of the Macaca mulatta Genome Sequencing Consortium are the Baylor College of Medicine Human Genome Sequencing Center, the Genome Sequencing Center at Washington University in St. Louis and the J. Craig Venter Institute Joint Technology Center.
The rhesus ... monkey that provided DNA for the project is ID 17573, a female from the Southwest National Primate Research Center at the Southwest Foundation for Biomedical Research in San Antonio, TX who was born Dec. 21, 1990 in San Antonio and died Jan. 25, 2002. All animals in that branch of the colony are derived from Indian origin rhesus brought to the US many years ago. This animal is not likely to be closely related to the Indian origin animal that provided DNA for the BAC library.
In June 2015 seven singleton scaffolds, KQ085875-KQ085881, were created because the scaffold length is shorter than the component length, meaning that these scaffolds are not identical to their components.  more

Global statistics

Total sequence length3,097,568,982
Total ungapped length2,871,181,313
Gaps between scaffolds1,891
Number of scaffolds124,054
Scaffold N506,094,595
Scaffold L50135
Number of contigs301,039
Contig N5025,707
Contig L5032,114
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)301,039

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000000115.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000308.1=NC_007858.12,536
Chromosome 2CM000288.1=NC_007859.11,557
Chromosome 3CM000289.1=NC_007860.12,151
Chromosome 4CM000290.1=NC_007861.11,592
Chromosome 5CM000291.1=NC_007862.11,473
Chromosome 6CM000292.1=NC_007863.11,404
Chromosome 7CM000293.1=NC_007864.11,633
Chromosome 8CM000294.1=NC_007865.11,151
Chromosome 9CM000295.1=NC_007866.11,265
Chromosome 10CM000296.1=NC_007867.11,386
Chromosome 11CM000297.1=NC_007868.11,477
Chromosome 12CM000298.1=NC_007869.1791
Chromosome 13CM000299.1=NC_007870.11,304
Chromosome 14CM000300.1=NC_007871.11,227
Chromosome 15CM000301.1=NC_007872.11,206
Chromosome 16CM000302.1=NC_007873.11,425
Chromosome 17CM000303.1=NC_007874.11,139
Chromosome 18CM000304.1=NC_007875.1650
Chromosome 19CM000305.1=NC_007876.12,070
Chromosome 20CM000306.1=NC_007877.11,165
Chromosome XCM000307.1=NC_007878.1949
unplacedn/an/an/a92,591

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule3,097,568,982124,0542,871,181,3136,094,595176,9851,891
Chromosome 1AllAssembled moleculeUnlocalized scaffolds234,560,296228,252,2156,308,0812,6981622,536219,576,101213,446,4206,129,6818,255,2168,255,2164,05614,80914,5962131611610
Chromosome 2AllAssembled moleculeUnlocalized scaffolds194,487,407189,746,6364,740,7711,608511,557186,016,853181,477,2834,539,57010,769,26610,769,2666,66910,56110,36020150500
Chromosome 3AllAssembled moleculeUnlocalized scaffolds203,221,608196,418,9896,802,6192,3231722,151180,616,889174,221,7176,395,1726,506,1916,506,1918,80811,56911,2712981711710
Chromosome 4AllAssembled moleculeUnlocalized scaffolds173,516,952167,655,6965,861,2561,664721,592165,555,640160,215,1175,340,5237,628,7137,628,71312,3249,8319,53429771710
Chromosome 5AllAssembled moleculeUnlocalized scaffolds186,202,302182,086,9694,115,3331,514411,473178,807,407174,874,2533,933,15411,061,74011,061,7405,2239,8139,68113240400
Chromosome 6AllAssembled moleculeUnlocalized scaffolds181,691,572178,205,2213,486,3511,487831,404173,741,857170,378,0983,363,7597,559,2317,559,2313,9309,8959,78910682820
Chromosome 7AllAssembled moleculeUnlocalized scaffolds174,453,523169,801,3664,652,1571,7431101,633162,965,325158,593,5064,371,8195,232,2445,232,2446,27010,70410,4822221091090
Chromosome 8AllAssembled moleculeUnlocalized scaffolds150,392,723147,794,9812,597,7421,215641,151139,565,221137,021,7542,543,4676,634,5837,070,4553,3767,9507,8876363630
Chromosome 9AllAssembled moleculeUnlocalized scaffolds137,430,609133,323,8594,106,7501,4171521,265126,871,047123,067,8713,803,1764,474,3744,641,8168,6567,7797,6321471511510
Chromosome 10AllAssembled moleculeUnlocalized scaffolds99,486,73794,855,7584,630,9791,4901041,38691,104,75886,818,7444,286,0144,032,1824,032,18213,7217,2057,0002051031030
Chromosome 11AllAssembled moleculeUnlocalized scaffolds139,991,109134,511,8955,479,2141,557801,477133,016,883127,686,3575,330,5265,955,3975,955,39722,0368,8768,63124579790
Chromosome 12AllAssembled moleculeUnlocalized scaffolds108,540,874106,505,8432,035,03182029791103,338,030101,395,5631,942,46716,494,69816,494,6984,5035,7075,6476028280
Chromosome 13AllAssembled moleculeUnlocalized scaffolds141,731,587138,028,9433,702,6441,362581,304128,793,220125,241,7213,551,4996,570,1876,570,1875,0737,7747,66710757570
Chromosome 14AllAssembled moleculeUnlocalized scaffolds135,941,100133,002,5722,938,5281,293661,227123,026,589120,216,3702,810,2196,297,4116,297,4113,8947,6757,5878865650
Chromosome 15AllAssembled moleculeUnlocalized scaffolds112,910,768110,119,3872,791,3811,274681,206106,871,477104,145,6912,725,78616,056,54116,056,5413,2976,8446,7737167670
Chromosome 16AllAssembled moleculeUnlocalized scaffolds82,434,49578,773,4323,661,0631,517921,42573,885,98770,457,7853,428,2023,491,9723,491,9724,3526,7636,62014391910
Chromosome 17AllAssembled moleculeUnlocalized scaffolds97,461,15494,452,5693,008,5851,233941,13992,050,97489,218,2702,832,7048,560,7138,560,7134,2795,0944,98510993930
Chromosome 18AllAssembled moleculeUnlocalized scaffolds75,010,23373,567,9891,442,2446904065071,133,38169,717,1421,416,2396,141,9296,318,4103,2133,9043,8743039390
Chromosome 19AllAssembled moleculeUnlocalized scaffolds69,627,49164,391,5915,235,9002,2631932,07052,135,10747,238,8854,896,2221,133,3261,175,0813,9886,3406,0722681921920
Chromosome 20AllAssembled moleculeUnlocalized scaffolds90,743,40588,221,7532,521,6521,231661,16571,745,86369,329,8312,416,0324,213,5124,213,5122,9915,7705,6868465650
Chromosome XAllAssembled moleculeUnlocalized scaffolds156,928,727153,947,5212,981,2061,064115949144,363,228141,500,8452,862,3832,965,6903,041,4649,2688,7848,6661181141140
unplacedAssembled molecule150,804,31092,591145,999,4761,4443,3380