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IDs: 529188 [UID] 5168 [GenBank] 529188 [RefSeq]
URL -- http://www.hydrazome.metazome.net JGI Project ID: 4088307 The 105 strain of Hydra magnipapillata originated from a single polyp collected by T. Sugiyama in September, 1973 in a swamp adjacent to the National Institute of Genetics in Mishima, Japan (T. Fujisawa, unpublished ... information). This strain of H. magnipapillata has been propagated in labs in Japan, Europe, and North America since then. For isolation of DNA for genome sequencing, the 105 strain was re-cloned from a single polyp in the Bode lab at UC Irvine using standard culture conditions. About 1000 polyps were harvested from the resulting culture and used to prepare DNA for genome sequencing. This version of the assembly, rp1, attempts to reduce haplotypic redundancy and assumes a mixture of ` 8X and ` 4X (haplotype-specific) coverage of an ` 1.0Gb genome. Contacts: Robert E. Steele (resteele@uci.edu) Daniel S. Rokhsar (dsrokhsar@lbl.gov) Ewen F. Kirkness (ekirknes@jcvi.org) Jarrod A. Chapman (jchapman@lbl.gov) This assembly of the Hydra magnipapillata strain 105 genome is a haploid type assembly, in which each locus is represented once. The ABRM00000000 WGS project is a more stringent assembly in which the multiple haplotypes may be represented as separate records. Assembly Method: Ringer-Phrap Assembly Name: Hydra_RP_1.0; RP Genome Coverage: around 4x per haplotype more
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