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Source database (GenBank or RefSeq) File type

Xenopus_tropicalis_v9.1

This assembly has been replaced. See current version

Organism name:

Xenopus tropicalis (tropical clawed frog)

Infraspecific name:

Strain: Nigerian

Sex:

female

BioSample:

SAMN00000117

BioProject:

PRJNA12348

Submitter:

DOE Joint Genome Institute

Date:

2016/07/13

Synonyms:

xenTro9

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_000004195.3 (replaced)

RefSeq assembly accession:

GCF_000004195.3 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

AAMC03

Assembly method:

Meraculous v. May-2013

Genome coverage:

7.6x

Sequencing technology:

Illumina HiSeq 2000

IDs: 768701 [UID] 3341798 [GenBank] 3369638 [RefSeq]

See Genome Information for Xenopus tropicalis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000004195.4	≠	GCF_000004195.4	UCB_Xtro_10.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_000004195.3	≠	GCF_000004195.3	Xenopus_tropicalis_v9.1	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000004195.2	≠	GCF_000004195.2	Xtropicalis_v7	Scaffold	Replaced GenBank, Replaced RefSeq
GCA_000004195.1	=	GCF_000004195.1	v4.2	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	1,440,398,454
Total ungapped length	1,369,865,365
Gaps between scaffolds	0
Number of scaffolds	6,822
Scaffold N50	135,134,832
Scaffold L50	5
Number of contigs	61,330
Contig N50	71,041
Contig L50	5,552
Total number of chromosomes and plasmids	11
Number of component sequences (WGS or clone)	61,330

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM004443.1	=	NC_030677.1	0
Chromosome 2	CM004444.1	=	NC_030678.1	0
Chromosome 3	CM004445.1	=	NC_030679.1	0
Chromosome 4	CM004446.1	=	NC_030680.1	0
Chromosome 5	CM004447.1	=	NC_030681.1	0
Chromosome 6	CM004448.1	=	NC_030682.1	0
Chromosome 7	CM004449.1	=	NC_030683.1	0
Chromosome 8	CM004450.1	=	NC_030684.1	0
Chromosome 9	CM004451.1	=	NC_030685.1	0
Chromosome 10	CM004452.1	=	NC_030686.1	0
unplaced	n/a	n/a	n/a	6,811

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,440,380,844	6,821	1,369,847,755	135,134,832	54,508
Chromosome 1	194,866,763	1	188,801,249	194,866,763	5,355
Chromosome 2	170,201,513	1	164,590,001	170,201,513	4,589
Chromosome 3	137,218,701	1	132,773,799	137,218,701	3,683
Chromosome 4	133,473,341	1	129,227,785	133,473,341	3,586
Chromosome 5	146,437,384	1	140,910,671	146,437,384	4,642
Chromosome 6	135,134,832	1	130,830,909	135,134,832	3,662
Chromosome 7	117,177,943	1	112,000,942	117,177,943	4,512
Chromosome 8	117,616,046	1	113,103,525	117,616,046	3,460
Chromosome 9	80,437,102	1	77,195,060	80,437,102	2,496
Chromosome 10	39,945,785	1	37,630,755	39,945,785	1,632
unplaced	167,871,434	6,811	142,783,059	242,484	16,891

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Xenopus_tropicalis_v9.1

See Genome Information for Xenopus tropicalis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear