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Source database (GenBank or RefSeq) File type

AilMel_1.0

Organism name:

Ailuropoda melanoleuca (giant panda)

Sex:

female

BioSample:

SAMN00008160

BioProject:

PRJNA38683

Submitter:

Beijing Genomics Institute, Shenzhen

Date:

2009/12/15

Synonyms:

ailMel1

Release type:

Minor

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_000004335.1 (latest)

RefSeq assembly accession:

GCF_000004335.2 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

ACTA01

Genome coverage:

60x

IDs: 248491 [UID] 5798 [GenBank] 1505418 [RefSeq]

See Genome Information for Ailuropoda melanoleuca

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000004335.1	≠	GCF_000004335.2	AilMel_1.0	Scaffold	Latest GenBank, RefSeq suppressed
GCA_000004335.1	=	GCF_000004335.1	AilMel_1.0	Scaffold	Latest GenBank, RefSeq suppressed

Comment

Assembly Method: SOAPdenovo
Assembly Name: AilMel_1.0
Genome Coverage: 60x
Sequencing Technology: Illumina GA

Global statistics

Total sequence length	2,299,492,210
Total ungapped length	2,245,296,026
Gaps between scaffolds	0
Number of scaffolds	81,466
Scaffold N50	1,281,781
Scaffold L50	521
Number of contigs	200,592
Contig N50	39,886
Contig L50	16,105
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	200,592

Assembly

Genome Assembly

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AilMel_1.0

See Genome Information for Ailuropoda melanoleuca

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics