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Source database (GenBank or RefSeq) File type

Glycine_max_v2.1

This assembly has been replaced. See current version

Organism name:

Glycine max (soybean)

Infraspecific name:

Cultivar: Williams 82

BioSample:

SAMN00002965

BioProject:

PRJNA19861

Submitter:

US DOE Joint Genome Institute (JGI-PGF)

Date:

2018/07/24

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_000004515.4 (replaced)

RefSeq assembly accession:

GCF_000004515.5 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

ACUP03

Assembly method:

ARACHNE v. 200721016_modified

Genome coverage:

8.05x

Sequencing technology:

ABI 3739

IDs: 1832791 [UID] 6943708 [GenBank] 7001488 [RefSeq]

See Genome Information for Glycine max

Pathogen Detection Resources

There are 20 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000004515.5	≠	GCF_000004515.6	Glycine_max_v4.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_000004515.4	≠	GCF_000004515.5	Glycine_max_v2.1	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000004515.3	≠	GCF_000004515.4	Glycine_max_v2.0	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000004515.2	≠	GCF_000004515.3	V1.1	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000004515.1	≠	GCF_000004515.2	V1.0	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000004515.1	≠	GCF_000004515.1	V1.0	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	979,046,046
Total ungapped length	955,932,237
Gaps between scaffolds	387
Number of scaffolds	1,579
Scaffold N50	4,417,540
Scaffold L50	66
Number of contigs	17,187
Contig N50	182,849
Contig L50	1,548
Total number of chromosomes and plasmids	22
Number of component sequences (WGS or clone)	17,187

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM000834.3	=	NC_016088.3	0
Chromosome 2	CM000835.3	=	NC_016089.3	0
Chromosome 3	CM000836.3	=	NC_016090.3	0
Chromosome 4	CM000837.3	=	NC_016091.3	0
Chromosome 5	CM000838.2	=	NC_038241.1	0
Chromosome 6	CM000839.3	=	NC_038242.1	0
Chromosome 7	CM000840.3	=	NC_038243.1	0
Chromosome 8	CM000841.3	=	NC_038244.1	0
Chromosome 9	CM000842.3	=	NC_038245.1	0
Chromosome 10	CM000843.3	=	NC_038246.1	0
Chromosome 11	CM000844.3	=	NC_038247.1	0
Chromosome 12	CM000845.2	=	NC_038248.1	0
Chromosome 13	CM000846.2	=	NC_038249.1	0
Chromosome 14	CM000847.2	=	NC_038250.1	0
Chromosome 15	CM000848.2	=	NC_038251.1	0
Chromosome 16	CM000849.2	=	NC_038252.1	0
Chromosome 17	CM000850.3	=	NC_038253.1	0
Chromosome 18	CM000851.3	=	NC_038254.1	0
Chromosome 19	CM000852.3	=	NC_038255.1	0
Chromosome 20	CM000853.3	=	NC_038256.1	0
unplaced	n/a	n/a	n/a	1,170

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	JX463295.1	=	NC_020455.1
Chloroplast Pltd	DQ317523.1	=	NC_007942.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	978,491,270	1,577	955,377,461	4,417,540	15,608	387
Chromosome 1	56,831,624	18	56,006,442	7,049,813	669	17
Chromosome 2	48,577,505	21	47,816,156	3,529,575	590	20
Chromosome 3	45,779,781	25	44,876,028	4,194,401	811	24
Chromosome 4	52,389,146	16	51,621,967	5,890,138	630	15
Chromosome 5	42,234,498	11	41,330,014	6,576,563	581	10
Chromosome 6	51,416,486	32	50,010,747	3,087,069	732	31
Chromosome 7	44,630,646	17	43,786,767	4,758,905	593	16
Chromosome 8	47,837,940	18	47,194,410	6,613,040	620	17
Chromosome 9	50,189,764	20	49,396,540	4,721,133	679	19
Chromosome 10	51,566,898	29	50,742,105	5,269,600	626	28
Chromosome 11	34,766,867	25	34,213,118	1,965,170	408	24
Chromosome 12	40,091,314	18	39,260,854	3,865,471	638	17
Chromosome 13	45,874,162	20	45,129,430	5,421,623	654	19
Chromosome 14	49,042,192	20	48,310,252	4,277,786	595	19
Chromosome 15	51,756,343	24	50,678,738	3,471,157	687	23
Chromosome 16	37,887,014	25	37,146,869	4,684,337	445	24
Chromosome 17	41,641,366	14	40,973,966	7,474,746	496	13
Chromosome 18	58,018,742	22	56,986,512	5,641,931	722	21
Chromosome 19	50,746,916	19	49,786,931	5,508,361	631	18
Chromosome 20	47,904,181	13	47,243,010	5,338,530	588	12
unplaced	29,307,885	1,170	22,866,605	192,360	3,213	0

Molecule	Total Length
All	554,776
Mitochondrion MT	402,558
Chloroplast Pltd	152,218

Assembly

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Glycine_max_v2.1

See Genome Information for Glycine max

Pathogen Detection Resources

There are 20 assemblies for this organism

History (Show revision history)

Comment

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear