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Source database (GenBank or RefSeq) File type

dicty_2.7

Organism name:

Dictyostelium discoideum AX4 (cellular slime molds)

Infraspecific name:

Strain: AX4

BioSample:

SAMN02953606

BioProject:

PRJNA201

Submitter:

The Dictyostelium discoideum Sequencing Consortium

Date:

2009/08/24

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000004695.1 (latest)

RefSeq assembly accession:

GCF_000004695.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Ddp5.

Data displayed for RefSeq version

WGS Project:

AAFI02

Genome coverage:

8.3x

IDs: 255488 [UID] 255438 [GenBank] 255488 [RefSeq]

See Genome Information for Dictyostelium discoideum

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000004695.1	≠	GCF_000004695.1	dicty_2.7	Chromosome	Latest GenBank, Latest RefSeq

Comment

Each chromosome was individually shotgun cloned and assembled. Since the rDNA genes are present on extrachromosomal elements, they are not included within this project but are present in GenBank Accession Numbers AY171065-AY171067. Similarly, the mitochondrial DNA is not included ... but is present in GenBank Accession Number AB000109.
In August 2009 contig AAFI02000242 was suppressed because it was a contaminant, and contigs AAFI02000226 and AAFI02000244 were made secondary to contigs AAFI02000006 and AAFI02000262, respectively.
Assembly Name: dicty_2.7
Genome Coverage: 8.3x
Sequencing Technology: Sanger
Annotation was updated on the contigs in August 2009.  more

Global statistics

Total sequence length	34,204,973
Total ungapped length	34,181,973
Gaps between scaffolds	0
Number of scaffolds	41
Scaffold N50	5,450,249
Scaffold L50	3
Number of contigs	261
Contig N50	341,816
Contig L50	20
Total number of chromosomes and plasmids	8
Number of component sequences (WGS or clone)	261

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM000150.2	=	NC_007087.3	0
Chromosome 2	CM000151.3	=	NC_007088.5	0
Chromosome 3	CM000152.2	=	NC_007089.4	0
Chromosome 4	CM000153.2	=	NC_007090.3	0
Chromosome 5	CM000154.2	=	NC_007091.3	0
Chromosome 6	CM000155.2	=	NC_007092.3	0
Plasmid Ddp5	AF000580.1	=	NC_001889.1	0
unplaced	n/a	n/a	n/a	33

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	34,149,409	40	34,126,409	5,450,249	230
Chromosome 1	4,923,596	1	4,922,996	4,923,596	6
Chromosome 2	8,484,197	1	8,482,297	8,484,197	19
Chromosome 3	6,357,299	1	6,354,699	6,357,299	26
Chromosome 4	5,450,249	1	5,445,149	5,450,249	51
Chromosome 5	5,125,352	1	5,117,652	5,125,352	77
Chromosome 6	3,602,379	1	3,597,279	3,602,379	51
Plasmid Ddp5	14,955	1	14,955	14,955	0
unplaced	191,382	33	191,382	7,355	0

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dicty_2.7

See Genome Information for Dictyostelium discoideum

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear