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ASM862v1

Organism name:
Aquifex aeolicus VF5 (aquificales)
Taxonomy check:
OK
Infraspecific name:
Strain: VF5
BioSample:
SAMN02603207
BioProject:
PRJNA215
Submitter:
DIVERSA
Date:
1999/12/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000008625.1 (latest)
RefSeq assembly accession:
GCF_000008625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 30208 [UID] 9428 [GenBank] 30208 [RefSeq]

See Genome Information for Aquifex aeolicus

There are 7 assemblies for this organism

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History (Show revision history)

Comment

Putative indicates no similarity to known proteins 
Hypothetical indicates similarity to a protein of unknown function

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/22/2020 04:46:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,794
CDSs (total)::1,742
Genes (coding)::1,693
CDSs (with protein)::1,693
Genes (RNA)::52
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::44
ncRNAs::2
Pseudo Genes (total)::49
CDSs (without protein)::49
Pseudo Genes (ambiguous residues)::0 of 49
Pseudo Genes (frameshifted)::35 of 49
Pseudo Genes (incomplete)::6 of 49
Pseudo Genes (internal stop)::10 of 49
Pseudo Genes (multiple problems)::2 of 49
CRISPR Arrays::6
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,590,791
Total ungapped length1,590,791
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000008635.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AE000657.1=NC_000918.1
Plasmid ece1AE000667.1=NC_001880.1

Assembly statistics

MoleculeTotal
Length
All1,590,791
Chromosome 1,551,335
Plasmid ece139,456

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aquifex aeolicus VF5Aquifex aeolicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000164905.1Hydrogenobacter thermophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.300.440.40

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected
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