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ASM1004v1

Organism name:
Desulfitobacterium hafniense Y51 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: Y51
BioSample:
SAMD00061082
BioProject:
PRJNA16639
Submitter:
Research Institute of Innovative Technology for the Earth (RITE)
Date:
2006/03/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000010045.1 (latest)
RefSeq assembly accession:
GCF_000010045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 31548 [UID] 10848 [GenBank] 31548 [RefSeq]

See Genome Information for Desulfitobacterium hafniense

There are 8 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/18/2021 21:55:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,451
CDSs (total)::5,370
Genes (coding)::5,212
CDSs (with protein)::5,212
Genes (RNA)::81
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::158
CDSs (without protein)::158
Pseudo Genes (ambiguous residues)::0 of 158
Pseudo Genes (frameshifted)::92 of 158
Pseudo Genes (incomplete)::73 of 158
Pseudo Genes (internal stop)::22 of 158
Pseudo Genes (multiple problems)::25 of 158
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,727,534
Total ungapped length5,727,534
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000010055.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP008230.1=NC_007907.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,727,534

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Desulfitobacterium hafniense Y51Desulfitobacterium hafniense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000021925.1Desulfitobacterium hafniense DCB-2type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000021925.1Desulfitobacterium hafniensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.3379.6486.41
Best-match type98.3379.6486.41

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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