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ASM1340v1

Organism name:
Syntrophus aciditrophicus SB (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SB
BioSample:
SAMN02603418
BioProject:
PRJNA16258
Submitter:
Integrated Genomics
Date:
2006/01/26
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000013405.1 (latest)
RefSeq assembly accession:
GCF_000013405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 34508 [UID] 14208 [GenBank] 34508 [RefSeq]

See Genome Information for Syntrophus aciditrophicus

There are 6 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000013405.1-RS_2024_03_22
Annotation Date::03/22/2024 16:13:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,933
CDSs (total)::2,877
Genes (coding)::2,862
CDSs (with protein)::2,862
Genes (RNA)::56
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::15
CDSs (without protein)::15
Pseudo Genes (ambiguous residues)::0 of 15
Pseudo Genes (frameshifted)::6 of 15
Pseudo Genes (incomplete)::8 of 15
Pseudo Genes (internal stop)::2 of 15
Pseudo Genes (multiple problems)::1 of 15
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,179,300
Total ungapped length3,179,300
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000013415.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP000252.1=NC_007759.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,179,300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Syntrophus aciditrophicus SBSyntrophus aciditrophicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900109885.1Syntrophus gentianaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.1813.5611.61

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected