U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1784v1

Organism name:
Crocosphaera subtropica ATCC 51142 (cyanobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 51142
BioSample:
SAMN02604312
BioProject:
PRJNA20319
Submitter:
Washington University (WashU)
Date:
2008/04/01
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000017845.1 (latest)
RefSeq assembly accession:
GCF_000017845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 38948 [UID] 18648 [GenBank] 38948 [RefSeq]

See Genome Information for Crocosphaera subtropica

History (Show revision history)

Comment

Bacteria available from the ATCC Cell Biology Collection: ATCC 51142. Products annotated as "unknown" have been observed in high-throughput proteomics experiments. Products annotated as "conserved hypothetical protein" have orthologs in at least 6 other cyanobacterial genomes.
The annotation was added ... by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/16/2023 01:44:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,090
CDSs (total)::5,037
Genes (coding)::4,957
CDSs (with protein)::4,957
Genes (RNA)::53
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::43
ncRNAs::4
Pseudo Genes (total)::80
CDSs (without protein)::80
Pseudo Genes (ambiguous residues)::0 of 80
Pseudo Genes (frameshifted)::20 of 80
Pseudo Genes (incomplete)::48 of 80
Pseudo Genes (internal stop)::24 of 80
Pseudo Genes (multiple problems)::9 of 80
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,460,377
Total ungapped length5,460,377
Total number of chromosomes and plasmids6

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000017855.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome circularCP000806.1=NC_010546.1
Chromosome linearCP000807.1=NC_010547.1
Plasmid ACP000808.1=NC_010539.1
Plasmid BCP000809.1=NC_010541.1
Plasmid DCP000811.1=NC_010543.1
Plasmid pCCP000810.1=NC_010542.1

Assembly statistics

MoleculeTotal
Length
All5,460,377
Chromosome circular4,934,271
Chromosome linear429,701
Plasmid A39,620
Plasmid B31,856
Plasmid D10,244
Plasmid pC14,685

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Crocosphaera subtropica ATCC 51142Crocosphaera subtropica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000169335.1Crocosphaera chwakensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.2462.9858.48

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected