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IDs: 41068 [UID] 20828 [GenBank] 41068 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 2351359 Source DNA available from John C. Meeks (jcMeeks@ucdavis.edu) Bacteria available from ATCC: ATCC 29133 Contacts: John C. Meeks (jcMeeks@ucdavis.edu) David Bruce (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes ... have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) NOTE: This genome has an insertion element which pops out under certain growth conditions. When it pops out, gene Npun_R0414 is put together in one piece. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Name::GCF_000020025.1-RS_2024_03_15Annotation Date::03/15/2024 03:30:36Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.7Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::7,702CDSs (total)::7,602Genes (coding)::7,314CDSs (with protein)::7,314Genes (RNA)::100rRNAs::4, 4, 4 (5S, 16S, 23S)complete rRNAs::4, 4, 4 (5S, 16S, 23S)tRNAs::84ncRNAs::4Pseudo Genes (total)::288CDSs (without protein)::288Pseudo Genes (ambiguous residues)::0 of 288Pseudo Genes (frameshifted)::133 of 288Pseudo Genes (incomplete)::166 of 288Pseudo Genes (internal stop)::86 of 288Pseudo Genes (multiple problems)::85 of 288CRISPR Arrays::6##Genome-Annotation-Data-END##
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