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IDs: 42808 [UID] 22608 [GenBank] 42808 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4024134 Source DNA and bacteria available from Himadri Pakrasi (pakrasi@biology2.wustl.edu) Contacts: Himadri Pakrasi (pakrasi@biology2.wustl.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater ... than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::04/03/2023 01:18:23Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.5Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::4,547CDSs (total)::4,492Genes (coding)::4,404CDSs (with protein)::4,404Genes (RNA)::55rRNAs::2, 2, 2 (5S, 16S, 23S)complete rRNAs::2, 2, 2 (5S, 16S, 23S)tRNAs::45ncRNAs::4Pseudo Genes (total)::88CDSs (without protein)::88Pseudo Genes (ambiguous residues)::0 of 88Pseudo Genes (frameshifted)::24 of 88Pseudo Genes (incomplete)::49 of 88Pseudo Genes (internal stop)::30 of 88Pseudo Genes (multiple problems)::12 of 88CRISPR Arrays::5##Genome-Annotation-Data-END##
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