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ASM2226v1

Organism name:
Geotalea daltonii FRC-32 (d-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FRC-32
BioSample:
SAMN00623045
BioProject:
PRJNA16263
Submitter:
US DOE Joint Genome Institute
Date:
2009/01/27
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000022265.1 (latest)
RefSeq assembly accession:
GCF_000022265.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 43208 [UID] 23068 [GenBank] 43208 [RefSeq]

See Genome Information for Geotalea daltonii

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
jgi Project ID: 4001414
Source DNA and bacteria available from Joel Kostka (jkostka@ocean.fsu.edu)
Contacts: Joel Kostka (jkostka@ocean.fsu.edu)
 David Bruce (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with greater ... than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Meta information:
 Organism display name: Geobacter sp FRC-32
 Culture Collection IDs: 
 GOLD ID: Gi00944 http://genomesonline.org/GOLD_CARDS/Gi00944.html
 Sequencing Platforms: Sanger
 Sequencing Coverage: 10x
 Sequencing Status: Draft
 Phenotypes: Iron reducer, Uranium reducer
 Diseases: None
 Habitat: Fresh water, Soil, Sediment
 Oxygen Requirement: Anaerobe
 Cell Shape: Rod-shaped
 Motility: Motile
 Sporulation: Nonsporulating
 Energy Source: Chemolithotroph
 Temperature Range: Mesophile
 Biotic Relationship: Free living
 Isolation: Uranium-contaminated subsurface at US  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/23/2022 11:46:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,855
CDSs (total)::3,796
Genes (coding)::3,762
CDSs (with protein)::3,762
Genes (RNA)::59
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::34
CDSs (without protein)::34
Pseudo Genes (ambiguous residues)::0 of 34
Pseudo Genes (frameshifted)::7 of 34
Pseudo Genes (incomplete)::26 of 34
Pseudo Genes (internal stop)::3 of 34
Pseudo Genes (multiple problems)::2 of 34
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,304,501
Total ungapped length4,304,501
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000022275.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP001390.1=NC_011979.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,304,501

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Geotalea daltonii FRC-32Geotalea daltonii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001311985.1Geotalea toluenoxydanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.9881.6683.54

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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