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URL -- http://www.jgi.doe.gov
jgi Project ID: 4001414
Source DNA and bacteria available from Joel Kostka (jkostka@ocean.fsu.edu)
Contacts: Joel Kostka (jkostka@ocean.fsu.edu)
 David Bruce (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with greater ... than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Meta information:
 Organism display name: Geobacter sp FRC-32
 Culture Collection IDs: 
 GOLD ID: Gi00944 http://genomesonline.org/GOLD_CARDS/Gi00944.html
 Sequencing Platforms: Sanger
 Sequencing Coverage: 10x
 Sequencing Status: Draft
 Phenotypes: Iron reducer, Uranium reducer
 Diseases: None
 Habitat: Fresh water, Soil, Sediment
 Oxygen Requirement: Anaerobe
 Cell Shape: Rod-shaped
 Motility: Motile
 Sporulation: Nonsporulating
 Energy Source: Chemolithotroph
 Temperature Range: Mesophile
 Biotic Relationship: Free living
 Isolation: Uranium-contaminated subsurface at US  more

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/25/2020 03:55:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,852
CDSs (total)::3,793
Genes (coding)::3,745
CDSs (with protein)::3,745
Genes (RNA)::59
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::48
CDSs (without protein)::48
Pseudo Genes (ambiguous residues)::0 of 48
Pseudo Genes (frameshifted)::14 of 48
Pseudo Genes (incomplete)::32 of 48
Pseudo Genes (internal stop)::4 of 48
Pseudo Genes (multiple problems)::2 of 48
CRISPR Arrays::1
##Genome-Annotation-Data-END##

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