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ASM9166v1

Organism name:
Methanocaldococcus jannaschii DSM 2661 (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 2661
BioSample:
SAMN02603984
BioProject:
PRJNA102
Submitter:
TIGR
Date:
1999/12/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000091665.1 (latest)
RefSeq assembly accession:
GCF_000091665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 114038 [UID] 112298 [GenBank] 114038 [RefSeq]

See Genome Information for Methanocaldococcus jannaschii

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/24/2023 01:03:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,904
CDSs (total)::1,859
Genes (coding)::1,818
CDSs (with protein)::1,818
Genes (RNA)::45
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::37
ncRNAs::2
Pseudo Genes (total)::41
CDSs (without protein)::41
Pseudo Genes (ambiguous residues)::0 of 41
Pseudo Genes (frameshifted)::30 of 41
Pseudo Genes (incomplete)::16 of 41
Pseudo Genes (internal stop)::2 of 41
Pseudo Genes (multiple problems)::6 of 41
CRISPR Arrays::15
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,739,927
Total ungapped length1,739,927
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000091675.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome L77117.1=NC_000909.1
Plasmid pDSM2661_1L77118.1=NC_001732.1
Plasmid pDSM2661_2L77119.1=NC_001733.1

Assembly statistics

MoleculeTotal
Length
All1,739,927
Chromosome 1,664,970
Plasmid pDSM2661_158,407
Plasmid pDSM2661_216,550

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methanocaldococcus jannaschii DSM 2661Methanocaldococcus jannaschii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000739065.1Methanocaldococcus bathoardescenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.2263.6468.88

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected