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Source database (GenBank or RefSeq) File type

Acyr_2.0

Organism name:

Acyrthosiphon pisum (pea aphid)

Infraspecific name:

Strain: LSR1

BioSample:

SAMN00000061

BioProject:

PRJNA13657

Submitter:

Baylor College of Medicine

Date:

2010/06/24

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_000142985.2 (latest)

RefSeq assembly accession:

GCF_000142985.2 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

ABLF02

Assembly method:

Newbler v. 2.3-PreRelease-09142009; phrap version 1.080812; atlas-link0.5; atlas-overlapper-1.70

Genome coverage:

15x

Sequencing technology:

Sanger; 454

IDs: 246238 [UID] 165438 [GenBank] 246238 [RefSeq]

See Genome Information for Acyrthosiphon pisum

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000142985.2	≠	GCF_000142985.2	Acyr_2.0	Scaffold	Latest GenBank, RefSeq suppressed
GCA_000142985.1	≠	GCF_000142985.1	Acyr_1.0	Scaffold	Replaced GenBank, RefSeq suppressed

Comment

Acyr_2.0 is a draft assembly of the pea aphid, Acyrthosiphon pisum, using whole genome shotgun (WGS) reads from small insert clones as well as BAC end sequences and 454 reads assembled with the Atlas genome assembly system at the ... Baylor College of Medicine Human Genome Sequencing Center.

For more information, see http://www.hgsc.bcm.tmc.edu  more

Global statistics

Total sequence length	541,675,471
Total ungapped length	499,891,231
Gaps between scaffolds	0
Number of scaffolds	23,924
Scaffold N50	518,546
Scaffold L50	280
Number of contigs	60,595
Contig N50	28,201
Contig L50	4,434
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	67,586

Assembly

Genome Assembly

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Acyr_2.0

See Genome Information for Acyrthosiphon pisum

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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