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Source database (GenBank or RefSeq) File type

Papaya1.0

Organism name:

Carica papaya (papaya)

Infraspecific name:

Cultivar: SunUp

BioSample:

SAMN02953710

BioProject:

PRJNA20267

Submitter:

The Papaya Genome Sequencing Consortium

Date:

2008/05/06

Release type:

minor

Assembly level:

Scaffold

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000150535.1 (latest)

RefSeq assembly accession:

GCF_000150535.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

ABIM01

IDs: 173688 [UID] 173688 [GenBank] 4900908 [RefSeq]

See Genome Information for Carica papaya

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000150535.1	≠	GCF_000150535.2	Papaya1.0	Scaffold	Latest GenBank, Latest RefSeq

Comment

This version of the project is the Papaya1.0 assembly. It has approximately 3x coverage of the genome.

Global statistics

Total sequence length	370,418,818
Total ungapped length	272,369,845
Gaps between scaffolds	0
Number of scaffolds	17,766
Scaffold N50	1,089,885
Scaffold L50	91
Number of contigs	47,485
Contig N50	10,650
Contig L50	7,081
Total number of chromosomes and plasmids	11
Number of component sequences (WGS or clone)	47,485

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome LG1	n/a	n/a	n/a	24
Chromosome LG2	n/a	n/a	n/a	24
Chromosome LG3	n/a	n/a	n/a	47
Chromosome LG4	n/a	n/a	n/a	33
Chromosome LG5	n/a	n/a	n/a	41
Chromosome LG6	n/a	n/a	n/a	39
Chromosome LG7	n/a	n/a	n/a	22
Chromosome LG8	n/a	n/a	n/a	41
Chromosome LG9	n/a	n/a	n/a	38
unplaced	n/a	n/a	n/a	17,455

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	EU431224.1	=	NC_012116.1
Chloroplast Pltd	EU431223.1	=	NC_010323.1

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	369,781,828	17,764	271,732,855	1,089,885	29,719	0
Chromosome LG1	AllAssembled moleculeUnlocalized scaffolds	178,6490178,649	24024	178,6490178,649	16,973016,973	000	000
Chromosome LG2	AllAssembled moleculeUnlocalized scaffolds	145,4960145,496	24024	145,4960145,496	13,570013,570	000	000
Chromosome LG3	AllAssembled moleculeUnlocalized scaffolds	213,1310213,131	47047	213,1310213,131	8,96108,961	000	000
Chromosome LG4	AllAssembled moleculeUnlocalized scaffolds	327,8300327,830	33033	327,8300327,830	33,429033,429	000	000
Chromosome LG5	AllAssembled moleculeUnlocalized scaffolds	163,3330163,333	41041	163,3330163,333	11,350011,350	000	000
Chromosome LG6	AllAssembled moleculeUnlocalized scaffolds	205,5350205,535	39039	205,5350205,535	10,654010,654	000	000
Chromosome LG7	AllAssembled moleculeUnlocalized scaffolds	96,169096,169	22022	96,169096,169	9,86509,865	000	000
Chromosome LG8	AllAssembled moleculeUnlocalized scaffolds	170,0840170,084	41041	170,0840170,084	8,44408,444	000	000
Chromosome LG9	AllAssembled moleculeUnlocalized scaffolds	200,2210200,221	38038	200,2210200,221	16,553016,553	000	000
unplaced	Assembled molecule	368,081,380	17,455	270,032,407	1,090,247	29,719	0

Molecule	Total Length
All	636,990
Mitochondrion MT	476,890
Chloroplast Pltd	160,100

Assembly

Genome Assembly

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Papaya1.0

See Genome Information for Carica papaya

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

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Assembly Information

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Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear