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v2.0

Organism name:
Trichoderma reesei QM6a (ascomycete fungi)
Infraspecific name:
Strain: QM6a
BioSample:
SAMN02746107
BioProject:
PRJNA15571
Submitter:
DOE Joint Genome Institute
Date:
2011/07/18
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000167675.2 (latest)
RefSeq assembly accession:
GCF_000167675.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AAIL02
Assembly method:
Jazz
Genome coverage:
9x
Sequencing technology:
Sanger

IDs: 297058 [UID] 297058 [GenBank] 965198 [RefSeq]

See Genome Information for Trichoderma reesei

There are 14 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov/Treesei
JGI Project ID: 3435777
DNA was provided by Daniel Cullen (dcullen@facstaff.wisc.edui)
Stock culture and extracted DNA are available at ATCC: ATCC 13631 (http://www.atcc.org)
Contacts: Diego Martinez (admar@unm.edu)
 Igor V. Grigoriev (ivgrigoriev@lbl.gov)
This assembly contains additional finishing reads since the original submission.
Assembly ... and annotation done by JGI.
Finishing done by JGI-Los Alomos National Laboratory
Manual curation done by the Trichoderma reesei User Community
Originally misnamed as strain QM9414
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length33,395,713
Total ungapped length33,348,591
Gaps between scaffolds0
Number of scaffolds77
Scaffold N501,219,543
Scaffold L509
Number of contigs128
Contig N50797,352
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)121

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced33,395,7137733,348,5911,219,543510