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Comment

This sequence is generated as a part of the Human Microbiome Project (HMP), funded by the National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI) Large-Scale Sequencing Research Network and the National Institute of Allergy and Infectious ... Diseases (NIAID) Microbial Genome Sequencing Centers Program. The mission of the HMP is to generate resources to enable the characterization of the human microbiota, the microbial communities living within human bodies, and analyze the role of these organisms in human health and disease. See http://www.hmpdacc.org/ for more information.
This is a reference genome for the Human Microbiome Project.
This project is co-owned with the Human Microbiome Project DACC.
Coverage:
Sanger sequencing technology 15.6x
454 GS20 technology (fragment reads) 11x
454 GS20 technology (2kb insert paired end reads) 7.5x
54 FLX technology (8 kb insert paired end reads) 73x
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/  more

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000174395.2-RS_2024_03_20
Annotation Date::03/20/2024 02:03:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,018
CDSs (total)::2,932
Genes (coding)::2,778
CDSs (with protein)::2,778
Genes (RNA)::86
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::64
ncRNAs::4
Pseudo Genes (total)::154
CDSs (without protein)::154
Pseudo Genes (ambiguous residues)::0 of 154
Pseudo Genes (frameshifted)::95 of 154
Pseudo Genes (incomplete)::62 of 154
Pseudo Genes (internal stop)::25 of 154
Pseudo Genes (multiple problems)::23 of 154
##Genome-Annotation-Data-END##

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