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ASM19655v1

Organism name:
Bifidobacterium longum subsp. longum JCM 1217 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 1217
BioSample:
SAMD00060951
BioProject:
PRJDA32047
Submitter:
University of Tokyo, Graduate School of Frontier Sciences
Date:
2011/01/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000196555.1 (latest)
RefSeq assembly accession:
GCF_000196555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 264978 [UID] 257378 [GenBank] 264978 [RefSeq]

See Genome Information for Bifidobacterium longum

There are 1641 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/11/2024 00:51:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,033
CDSs (total)::1,940
Genes (coding)::1,898
CDSs (with protein)::1,898
Genes (RNA)::93
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::77
ncRNAs::4
Pseudo Genes (total)::42
CDSs (without protein)::42
Pseudo Genes (ambiguous residues)::0 of 42
Pseudo Genes (frameshifted)::12 of 42
Pseudo Genes (incomplete)::32 of 42
Pseudo Genes (internal stop)::5 of 42
Pseudo Genes (multiple problems)::7 of 42
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,385,164
Total ungapped length2,385,164
Total number of chromosomes and plasmids1

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PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000196565.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP010888.1=NC_015067.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,385,164

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium longum subsp. longum JCM 1217Bifidobacterium longum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900637335.1Bifidobacterium longumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900637335.1Bifidobacterium longumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.00100.00
Best-match type99.99100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna