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ASM20389v1

Organism name:
Paracoccus denitrificans PD1222 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PD1222
BioSample:
SAMN02598290
BioProject:
PRJNA13020
Submitter:
DOE Joint Genome Institute
Date:
2006/12/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000203895.1 (latest)
RefSeq assembly accession:
GCF_000203895.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 276408 [UID] 265668 [GenBank] 276408 [RefSeq]

See Genome Information for Paracoccus denitrificans

There are 17 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/16/2024 01:39:07
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,222
CDSs (total)::5,157
Genes (coding)::5,055
CDSs (with protein)::5,055
Genes (RNA)::65
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::53
ncRNAs::3
Pseudo Genes (total)::102
CDSs (without protein)::102
Pseudo Genes (ambiguous residues)::0 of 102
Pseudo Genes (frameshifted)::33 of 102
Pseudo Genes (incomplete)::86 of 102
Pseudo Genes (internal stop)::7 of 102
Pseudo Genes (multiple problems)::22 of 102
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,236,194
Total ungapped length5,236,194
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000203905.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP000489.1=NC_008686.1
Chromosome 2CP000490.1=NC_008687.1
Plasmid 1CP000491.1=NC_008688.1

Assembly statistics

MoleculeTotal
Length
All5,236,194
Chromosome 12,852,282
Chromosome 21,730,097
Chromosome 1653,815

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Paracoccus denitrificans PD1222Paracoccus denitrificans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004063735.1Paracoccus denitrificanstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004063735.1Paracoccus denitrificanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.5999.48
Best-match type99.9999.5999.48

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna