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Source database (GenBank or RefSeq) File type

Bter_1.0

Organism name:

Bombus terrestris (buff-tailed bumblebee)

Sex:

male

BioSample:

SAMN00009041

BioProject:

PRJNA45869

Submitter:

Baylor College of Medicine

Date:

2011/06/03

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_000214255.1 (latest)

RefSeq assembly accession:

GCF_000214255.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

AELG01

Assembly method:

Newbler v. 2.3-PreRelease-10/19/2009 and Phrap

Genome coverage:

21.4x

Sequencing technology:

454

IDs: 294348 [UID] 286608 [GenBank] 294348 [RefSeq]

See Genome Information for Bombus terrestris

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000214255.1	=	GCF_000214255.1	Bter_1.0	Chromosome	Latest GenBank, RefSeq suppressed

Comment

Contact ncbi-contacts@bcm.tmc.edu for more information.
The DNA source was a single haploid drone for the XLR fragment library and pools of haploid drones for the 20kb and 8kb libraries. Drones were provided by Paul Schmid-Hempel. 
Bter_1.0 was created with 454 ... Newbler assembler v. 2.3-PreRelease-10/19/2009 for the shotgun sequences, followed by local re-assembly with additional unassembled mate-pairs using Phrap to close additional gaps.  more

Global statistics

Total sequence length	248,654,244
Total ungapped length	236,382,229
Gaps between scaffolds	69
Number of scaffolds	5,678
Scaffold N50	3,506,793
Scaffold L50	18
Number of contigs	10,672
Contig N50	76,043
Contig L50	890
Total number of chromosomes and plasmids	18
Number of component sequences (WGS or clone)	10,672

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG B01	CM001169.1	=	NC_015762.1	0
Linkage Group LG B02	CM001170.1	=	NC_015763.1	0
Linkage Group LG B03	CM001171.1	=	NC_015764.1	0
Linkage Group LG B04	CM001172.1	=	NC_015765.1	0
Linkage Group LG B05	CM001173.1	=	NC_015766.1	0
Linkage Group LG B06	CM001174.1	=	NC_015767.1	0
Linkage Group LG B07	CM001175.1	=	NC_015768.1	0
Linkage Group LG B08	CM001176.1	=	NC_015769.1	0
Linkage Group LG B09	CM001177.1	=	NC_015770.1	0
Linkage Group LG B10	CM001178.1	=	NC_015771.1	0
Linkage Group LG B11	CM001179.1	=	NC_015772.1	0
Linkage Group LG B12	CM001180.1	=	NC_015773.1	0
Linkage Group LG B13	CM001181.1	=	NC_015774.1	0
Linkage Group LG B14	CM001182.1	=	NC_015775.1	0
Linkage Group LG B15	CM001183.1	=	NC_015776.1	0
Linkage Group LG B16	CM001184.1	=	NC_015777.1	0
Linkage Group LG B17	CM001185.1	=	NC_015778.1	0
Linkage Group LG B18	CM001186.1	=	NC_015779.1	0
unplaced	n/a	n/a	n/a	5,591

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	248,654,244	5,678	236,382,229	3,506,793	4,994	69
Linkage Group LG B01	17,153,651	10	16,200,023	1,991,050	322	9
Linkage Group LG B02	13,603,873	4	13,119,591	3,020,712	248	3
Linkage Group LG B03	14,656,165	6	13,931,822	3,865,109	282	5
Linkage Group LG B04	14,241,696	5	13,580,641	10,399,280	270	4
Linkage Group LG B05	11,918,102	2	11,546,198	11,411,890	214	1
Linkage Group LG B06	12,724,418	5	12,223,092	6,596,734	205	4
Linkage Group LG B07	18,145,390	4	17,403,988	13,651,897	344	3
Linkage Group LG B08	9,733,834	5	9,323,129	2,773,881	157	4
Linkage Group LG B09	15,655,298	6	14,973,278	2,342,655	318	5
Linkage Group LG B10	13,618,662	4	12,970,843	10,902,106	290	3
Linkage Group LG B11	17,228,712	5	16,453,825	3,403,609	359	4
Linkage Group LG B12	12,868,931	3	12,492,901	7,767,148	195	2
Linkage Group LG B13	9,884,808	6	9,415,887	5,175,709	168	5
Linkage Group LG B14	11,649,563	8	10,970,353	3,128,055	223	7
Linkage Group LG B15	11,467,329	6	10,911,315	6,603,705	186	5
Linkage Group LG B16	5,274,633	3	5,006,875	2,779,439	114	2
Linkage Group LG B17	3,558,169	2	3,212,924	3,506,793	129	1
Linkage Group LG B18	3,466,108	3	3,078,072	2,916,968	126	2
unplaced	31,804,902	5,591	29,567,472	626,856	844	0

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Bter_1.0

See Genome Information for Bombus terrestris

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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