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IDs: 291998 [UID] 289058 [GenBank] 291998 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4085567 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done ... by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::05/02/2023 01:52:42Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.5Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::2,287CDSs (total)::2,227Genes (coding)::2,217CDSs (with protein)::2,217Genes (RNA)::60rRNAs::2, 2, 2 (5S, 16S, 23S)complete rRNAs::2, 2, 2 (5S, 16S, 23S)tRNAs::50ncRNAs::4Pseudo Genes (total)::10CDSs (without protein)::10Pseudo Genes (ambiguous residues)::0 of 10Pseudo Genes (frameshifted)::2 of 10Pseudo Genes (incomplete)::6 of 10Pseudo Genes (internal stop)::3 of 10Pseudo Genes (multiple problems)::1 of 10CRISPR Arrays::3##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Thermodesulfatator indicus CIR29812, DSM 15286collection_date::April 2001lat_lon::-25.316667 70.033355depth::2420alt_elev::Missingcountry::Indian Oceanenvironment::Deep sea, Hydrothermal vent, Marinenum_replicons::1ref_biomaterial::DSM 15286, JCM 11887biotic_relationship::Free livingtrophic_level::Chemolithoautotrophrel_to_oxygen::Anaerobeisol_growth_condt::14742485sequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release)finishing_strategy::FinishedGOLD Stamp ID::Gi02944Type Strain::YesGreengenes ID::52699Isolation Site::Deep-sea hydrothermal vent site at the Kairei vent field on the Central Indian Ridge Indian OceanIsolation Comments::isolated by H. MoussardCell Shape::Rod-shapedMotility::MotileSporulation::NonsporulatingTemperature Range::ThermophileTemperature Optimum::70CpH::6.25Gram Staining::Gram-Diseases::None##MIGS-Data-END##
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