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Dfic_2.0

Organism name:
Drosophila ficusphila (flies)
BioSample:
SAMN00715126
BioProject:
PRJNA62317
Submitter:
Baylor College of Medicine
Date:
2013/03/04
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000220665.2 (latest)
RefSeq assembly accession:
GCF_000220665.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AFFG02
Assembly method:
Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0
Genome coverage:
208.7x
Sequencing technology:
454; Illumina

IDs: 555078 [UID] 555078 [GenBank] 3298208 [RefSeq]

See Genome Information for Drosophila ficusphila

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

This is an upgrade of the Dfic_1.0 assembly using illumina reads to fix indels and other improvements using BWA, samtools etc. Not a traditional assembler.

Global statistics

Total sequence length152,439,475
Total ungapped length151,050,603
Gaps between scaffolds0
Number of scaffolds5,754
Scaffold N501,050,541
Scaffold L5039
Number of contigs9,152
Contig N50275,894
Contig L50135
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)9,152

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced152,439,4755,754151,050,6031,050,5413,3980