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ASM23576v3

Organism name:
Enterobacter cloacae subsp. dissolvens SDM (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SDM
BioSample:
SAMN02603521
BioProject:
PRJNA74737
Submitter:
Shan Dong University
Date:
2012/06/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000235765.3 (latest)
RefSeq assembly accession:
GCF_000235765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 393068 [UID] 390398 [GenBank] 393068 [RefSeq]

See Genome Information for Enterobacter cloacae

There are 1008 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000235765.1-RS_2024_03_27
Annotation Date::03/27/2024 17:15:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,697
CDSs (total)::4,587
Genes (coding)::4,503
CDSs (with protein)::4,503
Genes (RNA)::110
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::79
ncRNAs::6
Pseudo Genes (total)::84
CDSs (without protein)::84
Pseudo Genes (ambiguous residues)::0 of 84
Pseudo Genes (frameshifted)::51 of 84
Pseudo Genes (incomplete)::33 of 84
Pseudo Genes (internal stop)::9 of 84
Pseudo Genes (multiple problems)::8 of 84
Pseudo Genes (short protein)::1 of 84
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,968,248
Total ungapped length4,968,248
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000235775.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003678.1=NC_018079.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,968,248

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter cloacae subsp. dissolvens SDMEnterobacter cloacae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_009660455.1Enterobacter cloacae subsp. dissolvenstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009660455.1Enterobacter cloacaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9792.8795.26
Best-match type98.9792.8795.26

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna