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Dbip_2.0

Organism name:
Drosophila bipectinata (flies)
BioSample:
SAMN00714473
BioProject:
PRJNA62313
Submitter:
Baylor College of Medicine
Date:
2013/03/04
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000236285.2 (latest)
RefSeq assembly accession:
GCF_000236285.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AFFE02
Assembly method:
Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_calland_upgrade.pl v. 1.0
Genome coverage:
266.3x
Sequencing technology:
454; Illumina

IDs: 555128 [UID] 555128 [GenBank] 3298258 [RefSeq]

See Genome Information for Drosophila bipectinata

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

This is an upgrade of the Dbip_1.0 assembly using illumina reads to fix indels and other improvements using BWA, samtools etc. Not a traditional assembler.

Global statistics

Total sequence length167,263,958
Total ungapped length166,411,051
Gaps between scaffolds0
Number of scaffolds5,500
Scaffold N50663,995
Scaffold L5052
Number of contigs8,675
Contig N50149,088
Contig L50228
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)8,675

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced167,263,9585,500166,411,051663,9953,1750