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ASM23792v2

Organism name:
Schistosoma mansoni (flatworms)
Infraspecific name:
Strain: Puerto Rico
BioSample:
SAMEA2272516
BioProject:
PRJEA36577
Submitter:
Schistosoma Genome Network
Date:
2011/12/13
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000237925.2 (replaced)
RefSeq assembly accession:
GCF_000237925.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Different: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
CABG01

IDs: 557858 [UID] 557858 [GenBank] 3549348 [RefSeq]

See Genome Information for Schistosoma mansoni

Pathogen Detection Resources

History (Show revision history)

Comment

Data release policy http://www.sanger.ac.uk/legal/#t_2

Global statistics

Total sequence length364,532,842
Total ungapped length362,506,473
Gaps between scaffolds0
Number of scaffolds885
Scaffold N5032,115,376
Scaffold L504
Number of contigs9,516
Contig N5076,721
Contig L501,410
Total number of chromosomes and plasmids9
Number of component sequences (WGS or clone)885

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000237935.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1HE601624.1=NC_031495.112
Chromosome 2HE601625.1=NC_031496.17
Chromosome 3HE601626.1=NC_031497.111
Chromosome 4HE601627.1=NC_031498.11
Chromosome 5HE601628.1=NC_031499.12
Chromosome 6HE601629.1=NC_031500.10
Chromosome 7HE601630.1=NC_031501.11
Chromosome WHE601631.1=NC_031502.14
unplacedn/an/an/a838

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule364,518,427884362,492,05832,115,3768,6310
Chromosome 1AllAssembled moleculeUnlocalized scaffolds79,985,91465,476,68114,509,2331311279,575,66865,140,07014,435,59865,476,68165,476,6811,721,9531,7581,400358000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds38,216,05534,464,4803,751,57581737,975,46934,240,6603,734,80934,464,48034,464,4801,056,38796388479000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds38,028,72527,965,50710,063,2181211137,824,47927,817,75310,006,72627,965,50727,965,5071,498,306849577272000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds34,586,77232,115,3762,471,39621134,409,30331,951,0162,458,28732,115,37632,115,3762,471,39673266864000
Chromosome 5AllAssembled moleculeUnlocalized scaffolds10,324,0869,384,253939,83331210,258,5829,324,330934,2529,384,2539,384,253480,04926123526000
Chromosome 6Assembled molecule20,039,393119,915,94720,039,3935520
Chromosome 7AllAssembled moleculeUnlocalized scaffolds11,043,2639,743,5501,299,71321110,977,1819,680,9921,296,1899,743,5509,743,5501,299,71324723017000
Chromosome WAllAssembled moleculeUnlocalized scaffolds61,504,48159,508,2691,996,21251461,165,56759,176,4501,989,11759,508,26959,508,2691,085,4191,3471,31334000
unplacedAssembled molecule70,789,73883870,389,862583,7291,9220
MoleculeTotal
Length
Mitochondrion MT14,415