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IDs: 504038 [UID] 503858 [GenBank] 504038 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4087498 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the ... distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::10/31/2023 03:26:40Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.6Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::7,052CDSs (total)::6,967Genes (coding)::6,750CDSs (with protein)::6,750Genes (RNA)::85rRNAs::3, 2, 2 (5S, 16S, 23S)complete rRNAs::3, 2, 2 (5S, 16S, 23S)tRNAs::74ncRNAs::4Pseudo Genes (total)::217CDSs (without protein)::217Pseudo Genes (ambiguous residues)::0 of 217Pseudo Genes (frameshifted)::107 of 217Pseudo Genes (incomplete)::128 of 217Pseudo Genes (internal stop)::41 of 217Pseudo Genes (multiple problems)::53 of 217CRISPR Arrays::9##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Oscillatoria sp. PCC 7112collection_date::Missinglat_lon::Missingdepth::Missingalt_elev::Missingcountry::USAenvironment::Missingnum_replicons::6ref_biomaterial::PCC 7112biotic_relationship::Free livingtrophic_level::Missingrel_to_oxygen::Missingisol_growth_condt::Missingsequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPSfinishing_strategy::FinishedGOLD Stamp ID::Gi04314Funding Program::DOE-GEBA 2009Isolation Site::soil in orchid houseIsolation Comments::isolated by A Neilson in 1970Temperature Range::MesophileGram Staining::Gram-Diseases::None##MIGS-Data-END##
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