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IDs: 504498 [UID] 504408 [GenBank] 504498 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4088214 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the ... distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::08/20/2023 11:09:20Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.6Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::3,593CDSs (total)::3,537Genes (coding)::3,492CDSs (with protein)::3,492Genes (RNA)::56rRNAs::3, 3, 3 (5S, 16S, 23S)complete rRNAs::3, 3, 3 (5S, 16S, 23S)tRNAs::43ncRNAs::4Pseudo Genes (total)::45CDSs (without protein)::45Pseudo Genes (ambiguous residues)::0 of 45Pseudo Genes (frameshifted)::15 of 45Pseudo Genes (incomplete)::25 of 45Pseudo Genes (internal stop)::11 of 45Pseudo Genes (multiple problems)::4 of 45CRISPR Arrays::10##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Cyanobacterium sp. PCC 10605collection_date::Missinglat_lon::Missingdepth::Missingalt_elev::Missingcountry::Missingenvironment::Fresh waternum_replicons::2ref_biomaterial::PCC 10605biotic_relationship::Free livingtrophic_level::Photoheterotrophrel_to_oxygen::Aerobeisol_growth_condt::Missingsequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPSfinishing_strategy::FinishedGOLD Stamp ID::Gi04526Funding Program::DOE-GEBA 2009Temperature Range::MesophileDiseases::None##MIGS-Data-END##
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