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ASM33118v2

Organism name:
Streptomyces rimosus subsp. rimosus ATCC 10970 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 10970
BioSample:
SAMN02471950
BioProject:
PRJNA182749
Submitter:
University of Strathclyde
Date:
2021/03/19
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000331185.2 (latest)
RefSeq assembly accession:
GCF_000331185.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 15/06/2018
Expected final version:
yes
Genome coverage:
120.0x
Sequencing technology:
PacBio; Illumina MiSeq

IDs: 9589841 [UID] 25687838 [GenBank] 25716578 [RefSeq]

See Genome Information for Streptomyces rimosus

Pathogen Detection Resources

There are 43 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Paul Herron, SIPBS, University of Strathclyde, Glasgow, G4 0RE, UK
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/17/2023 06:02:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::8,488
CDSs (total)::8,396
Genes (coding)::8,201
CDSs (with protein)::8,201
Genes (RNA)::92
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::195
CDSs (without protein)::195
Pseudo Genes (ambiguous residues)::0 of 195
Pseudo Genes (frameshifted)::69 of 195
Pseudo Genes (incomplete)::157 of 195
Pseudo Genes (internal stop)::18 of 195
Pseudo Genes (multiple problems)::43 of 195
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,643,891
Total ungapped length9,643,891
Total number of chromosomes and plasmids2

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000331195.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP048261.1=NZ_CP048261.1
Plasmid pSRP1CP048262.1=NZ_CP048262.1

Assembly statistics

MoleculeTotal
Length
All9,643,891
Chromosome 9,351,267
Plasmid pSRP1292,624

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces rimosus subsp. rimosus ATCC 10970Streptomyces rimosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_022760195.1Streptomyces rimosus subsp. rimosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022760195.1Streptomyces rimosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.0099.83
Best-match type99.99100.0099.83

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna