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Source database (GenBank or RefSeq) File type

P.mume_V1.0

Organism name:

Prunus mume (Japanese apricot)

Isolate:

BioSample:

SAMN02981503

BioProject:

PRJNA171605

Submitter:

BGI

Date:

2014/02/28

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000346735.1 (latest)

RefSeq assembly accession:

GCF_000346735.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

AOHF01

Assembly method:

SOAPdenovo v. 1.05

Genome coverage:

180x

Sequencing technology:

Illumina Hiseq2000

IDs: 558518 [UID] 558518 [GenBank] 1078848 [RefSeq]

See Genome Information for Prunus mume

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000346735.1	≠	GCF_000346735.1	P.mume_V1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	234,030,239
Total ungapped length	217,178,859
Gaps between scaffolds	462
Number of scaffolds	8,626
Scaffold N50	636,887
Scaffold L50	106
Number of contigs	23,761
Contig N50	32,274
Contig L50	1,962
Total number of chromosomes and plasmids	9
Number of component sequences (WGS or clone)	23,761

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG1	CM001826.1	=	NC_024126.1	0
Linkage Group LG2	CM001827.1	=	NC_024127.1	0
Linkage Group LG3	CM001828.1	=	NC_024128.1	0
Linkage Group LG4	CM001829.1	=	NC_024129.1	0
Linkage Group LG5	CM001830.1	=	NC_024130.1	0
Linkage Group LG6	CM001831.1	=	NC_024131.1	0
Linkage Group LG7	CM001832.1	=	NC_024132.1	0
Linkage Group LG8	CM001833.1	=	NC_024133.1	0
unplaced	n/a	n/a	n/a	8,155

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	233,872,527	8,625	217,021,147	636,887	15,135	462
Linkage Group LG1	26,753,024	67	25,051,811	689,598	1,595	66
Linkage Group LG2	42,086,771	79	39,496,332	748,144	2,544	78
Linkage Group LG3	24,358,521	67	22,687,754	624,532	1,559	66
Linkage Group LG4	23,934,096	50	22,612,557	835,211	1,409	49
Linkage Group LG5	26,133,890	76	24,499,282	603,636	1,607	75
Linkage Group LG6	21,292,200	57	19,961,963	557,001	1,336	56
Linkage Group LG7	17,044,513	39	15,957,554	797,335	985	38
Linkage Group LG8	17,249,391	35	16,348,992	814,776	967	34
unplaced	35,020,121	8,155	30,404,902	94,603	3,133	0

Assembly

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P.mume_V1.0

See Genome Information for Prunus mume

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear