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ASM42158v1

Organism name:
Thermodesulfatator atlanticus DSM 21156 (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 21156
BioSample:
SAMN02440586
BioProject:
PRJNA188821
Submitter:
DOE Joint Genome Institute
Date:
2013/07/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000421585.1 (latest)
RefSeq assembly accession:
GCF_000421585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ATXH01
Assembly method:
Unknown program v. before 2013-03-28
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 40571 [UID] 730008 [GenBank] 847278 [RefSeq]

See Genome Information for Thermodesulfatator atlanticus

There are 2 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1013933
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The ... JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
country::Atlantic Ocean
environment::Hydrothermal vent; Hot spring; Aquatic
investigation_type::bacteria_archaea
project_name::Thermodesulfatator atlanticus DSM 21156
sequencing_meth::WGS
ref_biomaterial::DSM 21156
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gi12004
Type Strain::Yes
Funding Program::DOE-CSP 2012
Isolation Site::Rainbow hydrothermal vent, black smoker chimney sample
Gram Staining::Gram-
##MIGS-Data-END##

Global statistics

Total sequence length2,302,285
Total ungapped length2,302,285
Number of contigs60
Contig N5070,117
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)60

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,302,285602,302,28570,11700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermodesulfatator atlanticus DSM 21156Thermodesulfatator atlanticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000215975.1Thermodesulfobacterium geofontistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.550.140.20

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected