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ASM47888v1

Organism name:
Adlercreutzia equolifaciens DSM 19450 (actinobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 19450
BioSample:
SAMD00061014
BioProject:
PRJDB1443
Submitter:
Azabu University
Date:
2013/08/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000478885.1 (latest)
RefSeq assembly accession:
GCF_000478885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.0.01.14; phrap v. 1.080730
Genome coverage:
33.1x
Sequencing technology:
454FLX; 3730xl

IDs: 69871 [UID] 822418 [GenBank] 822438 [RefSeq]

See Genome Information for Adlercreutzia equolifaciens

There are 49 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/27/2023 01:09:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,339
CDSs (total)::2,282
Genes (coding)::2,275
CDSs (with protein)::2,275
Genes (RNA)::57
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::48
ncRNAs::3
Pseudo Genes (total)::7
CDSs (without protein)::7
Pseudo Genes (ambiguous residues)::0 of 7
Pseudo Genes (frameshifted)::0 of 7
Pseudo Genes (incomplete)::7 of 7
Pseudo Genes (internal stop)::2 of 7
Pseudo Genes (multiple problems)::2 of 7
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,862,526
Total ungapped length2,862,526
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000478895.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP013105.1=NC_022567.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,862,526

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Adlercreutzia equolifaciens DSM 19450Adlercreutzia equolifaciens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016865385.1Adlercreutzia equolifaciens subsp. celatussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016865385.1Adlercreutzia equolifacienssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.0475.2073.47
Best-match type97.0475.2073.47

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna