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Citrus_clementina_v1.0

Organism name:
Citrus x clementina (clementine)
Infraspecific name:
Cultivar: Clemenules
BioSample:
SAMN02389527
BioProject:
PRJNA223006
Submitter:
International Citrus Genome Consortium
Date:
2013/11/08
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000493195.1 (latest)
RefSeq assembly accession:
GCF_000493195.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AMZM01
Assembly method:
ARACHNE v. 2007101641HA
Expected final version:
yes
Genome coverage:
6.96x
Sequencing technology:
ABI 3739

IDs: 80121 [UID] 856448 [GenBank] 1010588 [RefSeq]

See Genome Information for Citrus x clementina

History (Show revision history)

Comment

The haploid plant was generated by in situ parthenogenesis of clementine Clemenules (also called Nules) induced by irradiated pollen of Fortune mandarin followed by direct embryo germination in vitro.

Global statistics

Total sequence length301,364,702
Total ungapped length295,129,112
Gaps between scaffolds0
Number of scaffolds1,398
Scaffold N5031,410,901
Scaffold L504
Number of contigs8,962
Contig N50109,915
Contig L50791
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)8,962

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced301,364,7021,398295,129,11231,410,9017,5640