Guppy_female_1.0+MT

Organism name:: Poecilia reticulata (guppy)
Infraspecific name:: Strain: Guanapo
Sex:: female
BioSample:: SAMN02404645
BioProject:: PRJNA238429
Submitter:: Max Planck Institute for Developmental Biology
Date:: 2014/04/28
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_000633615.2 (latest)
RefSeq assembly accession:: GCF_000633615.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: AZHG01
Assembly method:: AllPaths v. 43668
Genome coverage:: 110.0x
Sequencing technology:: Illumina GAII

IDs: 175841 [UID] 1064028 [GenBank] 1144778 [RefSeq]

See Genome Information for Poecilia reticulata

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000633615.2	=	GCF_000633615.1	Guppy_female_1.0+MT	Chromosome	Latest GenBank, Latest RefSeq
GCA_000633615.1	n/a	n/a	Guppy_female_1.0	Chromosome	Replaced GenBank

Comment

Global statistics

Total sequence length	731,622,281
Total ungapped length	664,638,573
Gaps between scaffolds	261
Number of scaffolds	3,029
Scaffold N50	5,270,359
Scaffold L50	43
Number of contigs	40,144
Contig N50	41,908
Contig L50	4,424
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	40,144

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG1	CM002706.1	=	NC_024331.1	0
Linkage Group LG2	CM002707.1	=	NC_024332.1	0
Linkage Group LG3	CM002708.1	=	NC_024333.1	0
Linkage Group LG4	CM002709.1	=	NC_024334.1	0
Linkage Group LG5	CM002710.1	=	NC_024335.1	0
Linkage Group LG6	CM002711.1	=	NC_024336.1	0
Linkage Group LG7	CM002712.1	=	NC_024337.1	0
Linkage Group LG8	CM002713.1	=	NC_024338.1	0
Linkage Group LG9	CM002714.1	=	NC_024339.1	0
Linkage Group LG10	CM002715.1	=	NC_024340.1	0
Linkage Group LG11	CM002716.1	=	NC_024341.1	0
Linkage Group LG12	CM002717.1	=	NC_024342.1	0
Linkage Group LG13	CM002718.1	=	NC_024343.1	0
Linkage Group LG14	CM002719.1	=	NC_024344.1	0
Linkage Group LG15	CM002720.1	=	NC_024345.1	0
Linkage Group LG16	CM002721.1	=	NC_024346.1	0
Linkage Group LG17	CM002722.1	=	NC_024347.1	0
Linkage Group LG18	CM002723.1	=	NC_024348.1	0
Linkage Group LG19	CM002724.1	=	NC_024349.1	0
Linkage Group LG20	CM002725.1	=	NC_024350.1	0
Linkage Group LG21	CM002726.1	=	NC_024351.1	0
Linkage Group LG22	CM002727.1	=	NC_024352.1	0
Linkage Group LG23	CM002728.1	=	NC_024353.1	0
unplaced	n/a	n/a	n/a	2,744

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	731,605,743	3,028	664,622,035	5,270,359	37,115	261
Linkage Group LG1	34,115,677	15	31,650,943	4,330,420	1,531	14
Linkage Group LG2	46,286,544	15	41,728,955	7,004,946	2,509	14
Linkage Group LG3	35,265,442	9	32,624,432	5,474,908	1,624	8
Linkage Group LG4	31,497,199	9	29,167,712	7,095,084	1,503	8
Linkage Group LG5	33,908,744	19	31,322,665	5,182,579	1,478	18
Linkage Group LG6	31,529,174	11	28,640,614	6,431,323	1,494	10
Linkage Group LG7	31,413,364	14	28,767,594	15,871,953	1,471	13
Linkage Group LG8	27,946,405	18	25,093,722	4,052,591	1,558	17
Linkage Group LG9	34,117,797	9	31,888,744	21,430,553	1,425	8
Linkage Group LG10	32,819,797	15	29,499,977	5,398,014	1,766	14
Linkage Group LG11	28,875,558	16	26,212,240	7,116,145	1,485	15
Linkage Group LG12	26,439,574	11	23,986,247	9,697,260	1,413	10
Linkage Group LG13	33,524,197	10	30,807,477	10,216,297	1,579	9
Linkage Group LG14	28,338,960	13	25,977,206	5,513,391	1,287	12
Linkage Group LG15	30,644,713	9	28,765,515	5,604,404	1,278	8
Linkage Group LG16	33,199,742	14	30,794,937	5,086,783	1,381	13
Linkage Group LG17	30,788,009	16	27,516,346	2,527,551	1,780	15
Linkage Group LG18	22,026,651	17	19,976,553	2,725,948	1,042	16
Linkage Group LG19	28,470,737	6	25,457,849	7,334,544	1,631	5
Linkage Group LG20	26,385,442	12	24,001,966	2,757,486	1,255	11
Linkage Group LG21	25,773,841	11	23,346,131	6,595,916	1,351	10
Linkage Group LG22	25,248,790	7	23,412,341	6,185,376	1,017	6
Linkage Group LG23	18,084,596	8	17,118,585	4,411,186	599	7
unplaced	34,904,790	2,744	26,863,284	199,265	3,658	0

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Guppy_female_1.0+MT

See Genome Information for Poecilia reticulata

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear