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ASM69646v1

Organism name:
Pectobacterium atrosepticum (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JG10-08
BioSample:
SAMN02797737
BioProject:
PRJNA247436
Submitter:
Agricultural University of Hebei
Date:
2014/05/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000696465.1 (latest)
RefSeq assembly accession:
GCF_000696465.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. 2.04
Genome coverage:
95x
Sequencing technology:
Illumina Hiseq 2000

IDs: 181161 [UID] 1086688 [GenBank] 1637698 [RefSeq]

See Genome Information for Pectobacterium atrosepticum

There are 24 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000696465.1-RS_2024_04_21
Annotation Date::04/21/2024 01:03:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,475
CDSs (total)::4,368
Genes (coding)::4,285
CDSs (with protein)::4,285
Genes (RNA)::107
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::76
ncRNAs::9
Pseudo Genes (total)::83
CDSs (without protein)::83
Pseudo Genes (ambiguous residues)::0 of 83
Pseudo Genes (frameshifted)::33 of 83
Pseudo Genes (incomplete)::58 of 83
Pseudo Genes (internal stop)::10 of 83
Pseudo Genes (multiple problems)::15 of 83
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,004,926
Total ungapped length5,004,926
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000696475.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP007744.1=NZ_CP007744.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,004,926

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pectobacterium atrosepticumPectobacterium atrosepticum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019056595.1Pectobacterium atrosepticumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019056595.1Pectobacterium atrosepticumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3695.2094.62
Best-match type99.3695.2094.62

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna