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Lcup_2.0

  • Anomalous assembly.
Organism name:
Lucilia cuprina (Australian sheep blowfly)
Infraspecific name:
Strain: LS
Sex:
female
BioSample:
SAMN02422564
BioProject:
PRJNA203545
Submitter:
The i5k Initiative
Date:
2017/12/15
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000699065.2 (latest)
RefSeq assembly accession:
GCF_000699065.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
JHUJ02
Assembly method:
AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12c
Expected final version:
no
Genome coverage:
158.3x
Sequencing technology:
Illumina

IDs: 1492651 [UID] 5797368 [GenBank] 5803218 [RefSeq]

See Genome Information for Lucilia cuprina

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length378,274,262
Total ungapped length374,700,987
Gaps between scaffolds0
Number of scaffolds5,857
Scaffold N50275,862
Scaffold L50350
Number of contigs11,856
Contig N5094,823
Contig L50961
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)11,856

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced378,274,2625,857374,700,987275,8625,9990