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SchHae_2.0

Organism name:
Schistosoma haematobium (flatworms)
Sex:
pooled male and female
BioSample:
SAMN11431408
BioProject:
PRJNA78265
Submitter:
The University of Melbourne
Date:
2020/01/28
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000699445.2 (replaced)
RefSeq assembly accession:
GCF_000699445.2 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AMPZ02
Assembly method:
Dovetail HiRise v. Feb-2016; Haplomerger2 v. 3.2; PBJELLY2 PBSuite v.14.9.9; SSPACE-LongRead v. 1.1
Expected final version:
no
Genome coverage:
110.0x
Sequencing technology:
PacBio RSII; Illumina HiSeq

IDs: 5615361 [UID] 16344858 [GenBank] 21461208 [RefSeq]

See Genome Information for Schistosoma haematobium

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length371,394,055
Total ungapped length370,443,196
Gaps between scaffolds0
Number of scaffolds666
Scaffold N504,779,868
Scaffold L5026
Number of contigs15,694
Contig N5055,659
Contig L501,824
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)666

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced371,394,055666370,443,1964,779,86815,0280